View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11907_low_14 (Length: 355)
Name: NF11907_low_14
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 34899313 - 34899636
Alignment:
| Q |
14 |
gatgaacggccattctaataggagccttaaagactccagttccgccaccgctgccaataaattcttgcaatggctgataatgagacaaatcatcagaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899313 |
gatgaacggccattctaataggagccttaaagactccagttccgccaccgctgccaataaattcttgcaatggctgataatgagacaaatcatcagaaat |
34899412 |
T |
|
| Q |
114 |
cccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcaaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899413 |
cccaccactttcaatgtagtcctcagcaccaacagaatttgaattagcgaaaaagtcatcatcatccgtgtcagactcctcataaaaagaagaagactcg |
34899512 |
T |
|
| Q |
214 |
acgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatacgaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899513 |
acgatgttattcgatataaggctatcatcaagactgtgcttacggacttgatgatgccgtttgtgtgtagacgtgtctcgtagctgttggctatacgaat |
34899612 |
T |
|
| Q |
314 |
gtgttttgcgacgaggtggaacag |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34899613 |
gtgttttgcgacgaggtggaacag |
34899636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University