View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_low_16 (Length: 330)
Name: NF11907_low_16
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 17439068 - 17439397
Alignment:
| Q |
1 |
tccaccccttatagcagcagaaattgttggatttgctaatgaatttgctcatagtaccatttctgaaacggtccagggaacacatttggcccctccttgt |
100 |
Q |
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| T |
17439068 |
tccacccctaatagcagcagaaattgctggatttactgatgaatttactcatagtaccatttctgaaacggtccagggaacacatttggcccctccttgt |
17439167 |
T |
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| Q |
101 |
tggtgtgcgccaggtatgggttcaactaagataaatattgatgctggatgttttgataatggtgtgacagcttggggtttcttagaaagggatcataaag |
200 |
Q |
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| T |
17439168 |
tggtgtgcgccagatatgggttcaactaagataaatatcgatgctggatgttttgataatggtgtgacagcttggggactcttagaaagggatcataaag |
17439267 |
T |
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| Q |
201 |
gtgatgttatctatgctgcaactcatttagaaaatattagtacatcccctttagtggctgaaactcttgctttaagatggtgccttaattggctaatctc |
300 |
Q |
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| T |
17439268 |
gtgatgttatctatgcagcaactcatatagaaaatattagtacatcccctttagtggctgaaactcttgctttaagatggtgccttaattggctaatctc |
17439367 |
T |
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| Q |
301 |
ctccaaccatcctggacttgttgtcattga |
330 |
Q |
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| T |
17439368 |
ctccaaccatcctggacttgttgtcattga |
17439397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 312
Target Start/End: Complemental strand, 15056005 - 15055827
Alignment:
| Q |
134 |
aatattgatgctggatgttttgataatggtgtgacagcttggggtttcttagaaagggatcataaaggtgatgttatctatgctgcaactcatttagaaa |
233 |
Q |
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| T |
15056005 |
aatattgatgctggatgttttgaaaatggtgtcacggcttggggactaatagaaaaggatcataagggtgatgttaactttgctgcaactcattcagaaa |
15055906 |
T |
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| Q |
234 |
atattagtacatcccctttagtggctgaaactcttgctttaagatggtgccttaattggctaatctcctccaaccatcc |
312 |
Q |
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| T |
15055905 |
atatcagaacatcccctttattggctgaaactcttgctctaagatgttgtcttgattggatgatctcctccaaccatcc |
15055827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 30019603 - 30019536
Alignment:
| Q |
263 |
actcttgctttaagatggtgccttaattggctaatctcctccaaccatcctggacttgttgtcattga |
330 |
Q |
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| T |
30019603 |
actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttgtcattga |
30019536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 30041092 - 30041159
Alignment:
| Q |
263 |
actcttgctttaagatggtgccttaattggctaatctcctccaaccatcctggacttgttgtcattga |
330 |
Q |
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| T |
30041092 |
actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttgtcattga |
30041159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 30110570 - 30110637
Alignment:
| Q |
263 |
actcttgctttaagatggtgccttaattggctaatctcctccaaccatcctggacttgttgtcattga |
330 |
Q |
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| T |
30110570 |
actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttgtcattga |
30110637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 30235230 - 30235297
Alignment:
| Q |
263 |
actcttgctttaagatggtgccttaattggctaatctcctccaaccatcctggacttgttgtcattga |
330 |
Q |
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| T |
30235230 |
actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttgtcattga |
30235297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 30078130 - 30078063
Alignment:
| Q |
263 |
actcttgctttaagatggtgccttaattggctaatctcctccaaccatcctggacttgttgtcattga |
330 |
Q |
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| T |
30078130 |
actctttctctaagatggtgccttaattggttaatctcctccaaccaccctggacttgttatcattga |
30078063 |
T |
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