View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_low_17 (Length: 328)
Name: NF11907_low_17
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 78 - 313
Target Start/End: Original strand, 1317871 - 1318106
Alignment:
| Q |
78 |
gtttgaaaatgcatgcaaatatacttactctatgaaatctttccaataagcatcatttgcatcatcatttatgaaatctccccaagtttcaaagctgttg |
177 |
Q |
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| T |
1317871 |
gtttgaaaatgcatgcaaatatacttactctatgaaatctttccaataagcatcatttgcatcatcatttatgaaatctccccaagtttcaaagctgttg |
1317970 |
T |
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| Q |
178 |
gaagaagaagtgttacaacactcttttgcatttatcatcatgttttcttctcctaccttaaccgttcctgaacgttgaggtgaaactgaaaccagctttg |
277 |
Q |
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| T |
1317971 |
gaggaagaagtgttacaacactcttttgcatttatcatcatgttttcttctcctaccttaaccgttcctgaacgttgaggtgaaactgaaaccaactttg |
1318070 |
T |
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| Q |
278 |
gaagagaatttgataatactgttgaagcaaaatttg |
313 |
Q |
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| T |
1318071 |
gaagagaatttgataatactgttgaagcaaaatttg |
1318106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 291
Target Start/End: Complemental strand, 1284568 - 1284376
Alignment:
| Q |
99 |
tacttactctatgaaatctttccaataagcatcatttgcatcatcatttatgaaatctccccaagtttcaaagctgttggaagaagaagtgttacaacac |
198 |
Q |
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| T |
1284568 |
tacttactcaatgaaatctttccaataagtatcatttgcttcctcattcatgaaatctccccaagtttcaaatgttgtggaagaagaagggtcacaacac |
1284469 |
T |
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| Q |
199 |
---tcttttgcatttatcatcatgttttcttctcctaccttaaccgttcctgaacgttgaggtgaaactgaaaccagctttggaagagaatttgat |
291 |
Q |
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| T |
1284468 |
cgatcgtttgcattt---atgatgttttcttcgtctagtttaactggtactaaacgttgaggtgaaaccggaatcagctttggaagcgaatttgat |
1284376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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