View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_low_18 (Length: 322)
Name: NF11907_low_18
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 1674456 - 1674747
Alignment:
| Q |
19 |
aacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaatt |
118 |
Q |
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| T |
1674456 |
aacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaact |
1674555 |
T |
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| Q |
119 |
ttctgcttttgagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagag |
218 |
Q |
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| T |
1674556 |
ttctgctttggagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagag |
1674655 |
T |
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| Q |
219 |
cgatcgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtcctattcacatggcttctttctacgatctctg |
310 |
Q |
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| T |
1674656 |
cgatcgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtcctattcacatggcttctttctacgatctctg |
1674747 |
T |
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Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 45493696 - 45493987
Alignment:
| Q |
19 |
aacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45493696 |
aacaactctactgattctgttattcttccagttactaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaatt |
45493795 |
T |
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| Q |
119 |
ttctgcttttgagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagag |
218 |
Q |
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| T |
45493796 |
ttctgctttggagccagcaagttaatggcgtcattacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagag |
45493895 |
T |
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| Q |
219 |
cgatcgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggtcctattcacatggcttctttctacgatctctg |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45493896 |
cgattgccttcaaaacaagatctccgacgaatatcgcaagtggttaacgaaagatcaggttctattcacatggcttctttctacgatctctg |
45493987 |
T |
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