View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11907_low_21 (Length: 251)

Name: NF11907_low_21
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11907_low_21
NF11907_low_21
[»] chr4 (7 HSPs)
chr4 (7-251)||(9363061-9363306)
chr4 (187-249)||(25505321-25505383)
chr4 (186-249)||(36193317-36193380)
chr4 (185-249)||(30563692-30563756)
chr4 (198-251)||(12885671-12885724)
chr4 (189-249)||(27572606-27572666)
chr4 (187-249)||(22851215-22851277)
[»] chr8 (9 HSPs)
chr8 (113-247)||(17856875-17857008)
chr8 (182-251)||(28430010-28430079)
chr8 (182-250)||(1214335-1214403)
chr8 (182-251)||(42573197-42573266)
chr8 (187-251)||(17844904-17844968)
chr8 (182-247)||(13241122-13241187)
chr8 (187-251)||(25382264-25382328)
chr8 (182-251)||(5725815-5725886)
chr8 (115-173)||(29423336-29423394)
[»] chr5 (4 HSPs)
chr5 (182-249)||(28440852-28440919)
chr5 (185-251)||(37941227-37941293)
chr5 (191-247)||(41732252-41732308)
chr5 (198-250)||(19528113-19528165)
[»] chr3 (6 HSPs)
chr3 (127-251)||(29019936-29020062)
chr3 (182-251)||(26536471-26536540)
chr3 (187-249)||(26104446-26104508)
chr3 (195-249)||(53461648-53461702)
chr3 (124-250)||(52032746-52032876)
chr3 (48-96)||(6133246-6133295)
[»] chr1 (9 HSPs)
chr1 (113-249)||(4941766-4941904)
chr1 (182-249)||(3167455-3167522)
chr1 (187-251)||(46150019-46150083)
chr1 (124-250)||(40778045-40778172)
chr1 (114-251)||(13269197-13269335)
chr1 (182-248)||(34771275-34771341)
chr1 (182-240)||(21485885-21485943)
chr1 (196-250)||(23288690-23288744)
chr1 (187-249)||(8221669-8221729)
[»] chr7 (5 HSPs)
chr7 (182-251)||(7738788-7738857)
chr7 (111-249)||(24504294-24504431)
chr7 (182-250)||(35759122-35759190)
chr7 (109-249)||(2746618-2746758)
chr7 (119-242)||(19127015-19127138)
[»] chr2 (10 HSPs)
chr2 (113-246)||(20506687-20506819)
chr2 (182-251)||(36076451-36076520)
chr2 (191-251)||(11033109-11033169)
chr2 (182-249)||(37605879-37605946)
chr2 (182-246)||(36520881-36520944)
chr2 (115-247)||(13536968-13537099)
chr2 (182-249)||(39303510-39303577)
chr2 (197-249)||(8267472-8267524)
chr2 (188-251)||(20511841-20511904)
chr2 (187-216)||(42074781-42074810)
[»] chr6 (6 HSPs)
chr6 (185-251)||(33106041-33106107)
chr6 (182-249)||(24209202-24209269)
chr6 (113-249)||(3860843-3860979)
chr6 (186-244)||(24585234-24585293)
chr6 (119-158)||(33108040-33108079)
chr6 (201-251)||(2603791-2603841)
[»] scaffold0069 (1 HSPs)
scaffold0069 (195-251)||(2298-2354)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 9363061 - 9363306
Alignment:
Q  7 gaagcaaaggtgttggtcagtttagaatatttggatgataacagttgagaagaaaattggatgatagaaatcaagctatgttctcataggctattattca 106  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9363061 gaagccaaggtgttggtaagtttagaatatttggatgataacagttaagaagaaaattggatgatagaaatcaagctatgttctcataggctattattta 9363160  T
Q  107 ac-tggtagggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaa 205  Q
    || |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||        ||||||||||||||||||||||||    
T  9363161 acttggtagggccgacccaacagattaagaggcttaaaacaaaaattttaatgtggcttttaaaaatattttttttaacagaatatttatataaaatcaa 9363260  T
Q  206 ttttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9363261 ttttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 9363306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 25505383 - 25505321
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25505383 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 25505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 36193317 - 36193380
Alignment:
Q  186 gaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36193317 gaatatttatatgaaatcaattttgtggagatcaaaatttgaattcatgatcaagagtaattga 36193380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 30563756 - 30563692
Alignment:
Q  185 agaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||||||    
T  30563756 agaatatttatataaaatcaattttgtggagaccaaaatctgaattcatgagcaagagaaattga 30563692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 12885724 - 12885671
Alignment:
Q  198 aaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||||||  |||||||||||| | |||||||||||||||||||    
T  12885724 aaaatcaattttgtggagtccaaaatttgaatccttgaccaagagtaattgagg 12885671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 27572666 - 27572606
Alignment:
Q  189 tatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    ||||||||||| |||||||||  ||||| | |||||||||||||||| |||||||||||||    
T  27572666 tatttatataatatcaatttttcggagaccgaaatttgaattcatgaacaagagtaattga 27572606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 22851215 - 22851277
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||| | ||||||||  ||| ||||||||| | ||||||||||||||||||||    
T  22851215 aatatttatataaagtaaattttgtaaagaccaaaatttggaatcatgaccaagagtaattga 22851277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 17857008 - 17856875
Alignment:
Q  113 agggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattttgtg 212  Q
    |||||||||||||||||||||||||| ||||| ||||  ||||||| ||||| ||||||||        || ||||||||||||||||||||||| ||||    
T  17857008 agggccgacccaacagattaagaggcctaaaacaaaaaatttaatgtggcttgtaaaaatattttttc-aagagaatatttatataaaatcaattatgtg 17856910  T
Q  213 gagatcaaaatttgaattcatgaccaagagtaatt 247  Q
     ||| ||||||||||||| ||||||||||||||||    
T  17856909 aagaccaaaatttgaatttatgaccaagagtaatt 17856875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 28430010 - 28430079
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  28430010 aacagaatatttatataaaatcaattttgtggagaccaaaatttaaattcattaccaagagtaattgagg 28430079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 1214403 - 1214335
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgag 250  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  1214403 aacataatatttatataaaatcaattttgtggagaccaaaaattgaattcatgaccaagagtaattgag 1214335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 42573197 - 42573266
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||| ||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  42573197 aacaaaatatttgtataaaatcaattttatagagatcaaaatttaaattcatgaccaagagtaattgagg 42573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 17844904 - 17844968
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||    
T  17844904 aatatttatataaaatcaattttgtagagatcaaaatttaatttcatgatcaagagtaattgagg 17844968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 13241122 - 13241187
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaatt 247  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| | |||||||||    
T  13241122 aacagaatatttatataaaatcaattttgtggagaccaaaatttgagttcgtgatctagagtaatt 13241187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 25382264 - 25382328
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||| | |||||||||||||||    
T  25382264 aatatttatataaaatcaattttgtgaagactaaaatttgaattcattatcaagagtaattgagg 25382328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 5725815 - 5725886
Alignment:
Q  182 aacagaatatttatataaaatcaattttg--tggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||| ||||||||||||||||||||||||  | |||| |||||||||| ||| ||||| |||| ||||||||    
T  5725815 aacataatatttatataaaatcaattttgtatagagaccaaaatttgatttcgtgacctagagaaattgagg 5725886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 29423336 - 29423394
Alignment:
Q  115 ggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaata 173  Q
    |||||| |||| |||||||||||| ||||| |||| |||||||| ||| ||||||||||    
T  29423336 ggccgatccaatagattaagaggcctaaaacaaaaattttaatgcggcctttaaaaata 29423394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 28440919 - 28440852
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  28440919 aacagaatatttatataaaatcaattttgtggagattaaaatttgaatttatgaccaagagtaattga 28440852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 37941227 - 37941293
Alignment:
Q  185 agaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  37941227 agaatatttatataaaatcaattttgttgagaccaaaatttgaattcatgaccaagagtaattgagg 37941293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 41732252 - 41732308
Alignment:
Q  191 tttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaatt 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41732252 tttatataaaatcaattttatggagatcaaaatttgaattcatgaccaagagtaatt 41732308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 19528165 - 19528113
Alignment:
Q  198 aaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgag 250  Q
    ||||| |||||||| || |||||||||| | |||||||||||||||| |||||    
T  19528165 aaaataaattttgtagatatcaaaatttaagttcatgaccaagagtatttgag 19528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 29020062 - 29019936
Alignment:
Q  127 agattaagaggcttaaaata--aaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattttgtggagatcaaaatt 224  Q
    ||||||||| |||||||| |  ||| |||||||| ||| ||||||||||        ||||||||||||||||||||||||||||| ||||| | |||||    
T  29020062 agattaagaagcttaaaacacaaaaattttaatgtggcctttaaaaatatcttttttaacagaatatttatataaaatcaattttgaggagaccgaaatt 29019963  T
Q  225 tgaattcatgaccaagagtaattgagg 251  Q
    |||||||||||||||||||||||||||    
T  29019962 tgaattcatgaccaagagtaattgagg 29019936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 26536540 - 26536471
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||    
T  26536540 aacagaatatttatataaaatcaattttgtggagaccaaaacttgaatttatgaccaaaagtaattgagg 26536471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 26104446 - 26104508
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  26104446 aatagttatataaaatcaattgtgtggagattaaaatttgaattcatgaccaagagtaattga 26104508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 53461648 - 53461702
Alignment:
Q  195 tataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||| |||||||    
T  53461648 tataaaatcaattttgtggataccaaaatttgaatttatgaccaagaataattga 53461702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 52032746 - 52032876
Alignment:
Q  124 aacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaa-tcaattttgtggagatca--- 219  Q
    ||||||||||||||| | ||| ||||  ||||||| | | ||||||||||        |||| |||||||| |||||| ||||||||||||||| ||       
T  52032746 aacagattaagaggcctgaaacaaaaaatttaatgtgccctttaaaaatattttttttaacaaaatatttaaataaaaatcaattttgtggagaccacca 52032845  T
Q  220 aaatttgaattcatgaccaagagtaattgag 250  Q
    ||||||||||||||||||||||| |||||||    
T  52032846 aaatttgaattcatgaccaagagcaattgag 52032876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 6133246 - 6133295
Alignment:
Q  48 cagttgagaagaaaattggatgatagaaatcaagctatg-ttctcatagg 96  Q
    ||||| ||||||||||||||||||||||  ||||||||| ||||||||||    
T  6133246 cagttaagaagaaaattggatgatagaatccaagctatgattctcatagg 6133295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 4941904 - 4941766
Alignment:
Q  113 agggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnn--aacagaatatttatataaaatcaattttg 210  Q
    ||||||| |||||||||||||||||| ||||  |||| |||||||| ||||||||||||||          ||||||||| |||||||||||||||| ||    
T  4941904 agggccgtcccaacagattaagaggcctaaagcaaaaattttaatgtggcttttaaaaatatatttttttcaacagaatagttatataaaatcaattgtg 4941805  T
Q  211 tggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    ||||||  ||||||||||||||||||||||| |||||||    
T  4941804 tggagactaaaatttgaattcatgaccaagaataattga 4941766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 3167522 - 3167455
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  3167522 aacaaaatatttatataaaatcaattttgtggagaccaaaatttgaattcatgactaagagtaattga 3167455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 46150083 - 46150019
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  46150083 aatatttatagaaaatcaattttgtggagaccaaaatttgaattcatgaccaaaagtaattgagg 46150019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 40778172 - 40778045
Alignment:
Q  124 aacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnn-aacagaatatttatataaaatcaattttgtggagatcaaaa 222  Q
    ||||||||| ||||||||||| ||| ||||||||| ||| ||||||||||         |||| |||||||||||||| |||||||||| || | |||||    
T  40778172 aacagattaggaggcttaaaacaaattttttaatgtggcctttaaaaatatttttatttaacaaaatatttatataaagtcaattttgtagataccaaaa 40778073  T
Q  223 tttgaattcatgaccaagagtaattgag 250  Q
    ||||||||||||| |||| |||||||||    
T  40778072 tttgaattcatgatcaagtgtaattgag 40778045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 251
Target Start/End: Original strand, 13269197 - 13269335
Alignment:
Q  114 gggccgacccaacagattaagaggcttaaaataaaatttttaatgaggctttt-aaaaatannnnnnnnaacagaatatttatataaaatcaattttgtg 212  Q
    |||||| ||||||||||||| |||| ||||  ||  ||||||||| ||||||| |||||||        ||  |||||||||||||||||||||| ||||    
T  13269197 gggccggcccaacagattaaaaggcctaaagaaatttttttaatgtggctttttaaaaataatttttttaattgaatatttatataaaatcaattgtgtg 13269296  T
Q  213 gagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||  |||||||||||||||||| ||||||||| ||||    
T  13269297 gagacaaaaatttgaattcatgacgaagagtaatagagg 13269335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 34771275 - 34771341
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattg 248  Q
    |||| ||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||    
T  34771275 aacataatatttatataaaaccaattttgtgcataacaaaatttgaattcatgaccaagagtaattg 34771341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 21485885 - 21485943
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaag 240  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||| ||||    
T  21485885 aacagaatatttatataaaatcaattttatggagaccaaaacttgaattcatgatcaag 21485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 23288744 - 23288690
Alignment:
Q  196 ataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgag 250  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  23288744 ataaaatcgattttgtagagatcaaaatttgaattcatgatcaagagtaattgag 23288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 8221669 - 8221729
Alignment:
Q  187 aatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||| ||||||||||||||  ||| ||||||||||||||  |||| |||||||||||    
T  8221669 aatatttatacaaaatcaattttgttaagaccaaaatttgaattc--gaccgagagtaattga 8221729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 7738788 - 7738857
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  7738788 aacaaaatatttatataaaatcaattttgtggaaaccaaaatttgaattcatgaccaagagtaattgagg 7738857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 24504294 - 24504431
Alignment:
Q  111 gtagggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattttg 210  Q
    ||||||||||||||| |||||||||| | ||||  ||||  ||||||| ||| || |||||||        |||| ||||||||||||||||||||||||    
T  24504294 gtagggccgacccaatagattaagagacataaatcaaaaaatttaatgtggccttcaaaaatattttttttaacaaaatatttatataaaatcaattttg 24504393  T
Q  211 tggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||| |||||||||||||||||| ||||| |||||||    
T  24504394 tggagaccaaaatttgaattcatga-caagaataattga 24504431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 35759122 - 35759190
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgag 250  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||||||||   |||||||||||||    
T  35759122 aacagaatatttatataaaatcaattccgtggagaccaaaatttgaattcatgctgaagagtaattgag 35759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 249
Target Start/End: Original strand, 2746618 - 2746758
Alignment:
Q  109 tggtagggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattt 208  Q
    ||||||| |||  |||||| |||||||||  ||||  ||||  |||| || ||||||||||||||        |||| |||||||||||||| |||||||    
T  2746618 tggtaggaccggtccaacaaattaagaggtctaaagcaaaaaatttattgtggcttttaaaaatattttctttaacaaaatatttatataaattcaattt 2746717  T
Q  209 tgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    ||  |||| |||||||||||||||||| |||||| ||||||    
T  2746718 tgctgagaacaaaatttgaattcatgatcaagagcaattga 2746758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 19127015 - 19127138
Alignment:
Q  119 gacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattttgtggagatc 218  Q
    ||||||||| |||||||||||||||  ||||  |||||||  || ||||||| ||        || |||| |||||||||||||||||||| |||||| |    
T  19127015 gacccaacaaattaagaggcttaaagcaaaaaatttaatgttgcctttaaaattattatttttaatagaagatttatataaaatcaattttatggagacc 19127114  T
Q  219 aaaatttgaattcatgaccaagag 242  Q
    || ||||||||| |||||||||||    
T  19127115 aacatttgaatttatgaccaagag 19127138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 246
Target Start/End: Complemental strand, 20506819 - 20506687
Alignment:
Q  113 agggccgacccaacaga-ttaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattttgt 211  Q
    ||||||||||||||||| ||||||||| ||||  |||| |||||||| | | ||||||||||        ||||||||||||||||||||||||||||||    
T  20506819 agggccgacccaacagaattaagaggcataaagcaaaaattttaatgtgacctttaaaaatattttttt-aacagaatatttatataaaatcaattttgt 20506721  T
Q  212 ggagatcaaaatttgaattcatgaccaagagtaat 246  Q
    ||||| |||||||||||||||||| ||||||||||    
T  20506720 ggagaccaaaatttgaattcatga-caagagtaat 20506687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 36076520 - 36076451
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  36076520 aacataatatttatataaaatcaattgtgtggagatcaaaatttgaattcaagaccaagagtaactgagg 36076451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 11033109 - 11033169
Alignment:
Q  191 tttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  11033109 tttatataaaatcaattttgtggagaccaaaatttgaattcatgatcaagagtaattgagg 11033169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 37605879 - 37605946
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||||    
T  37605879 aacagaatatttatataaaatcaattttgtggagactaaaatttgagttcatgactaagagtaattga 37605946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 36520881 - 36520944
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaat 246  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  36520881 aacataatatttatataaaatcaattttgtggagaccaaaatttgaattcatga-caagagtaat 36520944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 13537099 - 13536968
Alignment:
Q  115 ggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnnaacagaatatttatataaaatcaattttgtgga 214  Q
    |||||||||||||||||||||||||||||  ||||  ||||||| ||| ||| ||| ||        || ||||||||||||||||| |||||  |||||    
T  13537099 ggccgacccaacagattaagaggcttaaatcaaaaaatttaatgtggcctttgaaattattttttt-aatagaatatttatataaaagcaattgcgtgga 13537001  T
Q  215 gatcaaaatttgaattcatgaccaagagtaatt 247  Q
    || ||||||||||||||||||||| ||||||||    
T  13537000 gaccaaaatttgaattcatgaccatgagtaatt 13536968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 39303577 - 39303510
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    ||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  39303577 aacagaacattcataaaaaatcaattttgtggagatcaaaatttgaattgatgacctagagtaattga 39303510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 8267524 - 8267472
Alignment:
Q  197 taaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  8267524 taaaatcaattttgtggagacctaaatttgaattcatgaccaagagtaattga 8267472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 20511904 - 20511841
Alignment:
Q  188 atatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||| |||||| ||| |||||||||||||  ||||||||||||| ||| || ||||||||||||    
T  20511904 atatatatatataattaattttgtggagactaaaatttgaattcttgatcaggagtaattgagg 20511841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 42074810 - 42074781
Alignment:
Q  187 aatatttatataaaatcaattttgtggaga 216  Q
    ||||||||||||||||||||||||||||||    
T  42074810 aatatttatataaaatcaattttgtggaga 42074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 33106107 - 33106041
Alignment:
Q  185 agaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  33106107 agaatgtttatataaaatcaattttgtggagaccaaaatttgaattcatgacctagagtaattgagg 33106041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 24209202 - 24209269
Alignment:
Q  182 aacagaatatttatataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||    
T  24209202 aacagaatatttatataaaatctattttgttgagattaaaatttgaattcatgaccaatagtaattga 24209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 3860843 - 3860979
Alignment:
Q  113 agggccgacccaacagattaagaggcttaaaataaaatttttaatgaggcttttaaaaatannnnnnnn-aacagaatatttatataaaatcaattttgt 211  Q
    |||||||  ||||||||||||||||||||||| |||| |||||||| ||  ||||||| ||         ||||||| ||||||||||||||||||||||    
T  3860843 agggccggtccaacagattaagaggcttaaaacaaaaattttaatgtggtctttaaaagtatattttttcaacagaacatttatataaaatcaattttgt 3860942  T
Q  212 ggagatcaaaatttgaattcatgaccaagagtaattga 249  Q
    || || |||||||| ||||||||| | |||||||||||    
T  3860943 gg-gaccaaaatttaaattcatgatctagagtaattga 3860979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 24585293 - 24585234
Alignment:
Q  186 gaatatttatataaaatcaattttgt-ggagatcaaaatttgaattcatgaccaagagta 244  Q
    ||||||||||||||||| |||||| | ||||| ||||| |||||||||||||||||||||    
T  24585293 gaatatttatataaaattaatttttttggagaccaaaacttgaattcatgaccaagagta 24585234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 33108079 - 33108040
Alignment:
Q  119 gacccaacagattaagaggcttaaaataaaatttttaatg 158  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  33108079 gacccaacatattaagaggcttaaaataaaaattttaatg 33108040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 2603791 - 2603841
Alignment:
Q  201 atcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    |||||||||||||||| | |||||||||||||||| ||| |||||| ||||    
T  2603791 atcaattttgtggagaccgaaatttgaattcatgatcaaaagtaatagagg 2603841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 2354 - 2298
Alignment:
Q  195 tataaaatcaattttgtggagatcaaaatttgaattcatgaccaagagtaattgagg 251  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  2354 tataaaatcaattttatagagatcaaaatttgaattcatgaccaagagtaattgagg 2298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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