View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11907_low_29 (Length: 239)

Name: NF11907_low_29
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11907_low_29
NF11907_low_29
[»] chr2 (4 HSPs)
chr2 (1-203)||(28670976-28671182)
chr2 (1-166)||(28675120-28675282)
chr2 (1-116)||(28651254-28651369)
chr2 (1-116)||(28642393-28642508)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 28670976 - 28671182
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28670976 ttcacaatagaacatgcgtggaacttttgttactccattttctgtaagtccttggacaccaacctttgactcatcaaatttctttagttcactttttctg 28671075  T
Q  101 tcataaatttgagcattcccttctaaatcatcactcgtgattgtggccatcttgttttgag---cttatctttgcattaattttgtaatgaa-aaaagtt 196  Q
    ||||||||| ||| ||| ||| ||| ||||| ||| ||||||||||||||| ||||||| |    |||||||||||||||||||||||| ||  ||||||    
T  28671076 tcataaattggagaatttcctgctacatcattacttgtgattgtggccatcatgttttgtggtaattatctttgcattaattttgtaatcaaggaaagtt 28671175  T
Q  197 tgattgg 203  Q
    |||||||    
T  28671176 tgattgg 28671182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 28675120 - 28675282
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| ||| ||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||| || |||| |||||||||||||    
T  28675120 ttcacaatggaacatacgtggaacttttgtgacaccattttctacaagtccttggacaccaacctttgactcatcaaagttttttagttcactttttctg 28675219  T
Q  101 tcataaatttgagcattcccttctaaatcatcactcgtgattgtggccatcttgttttgagcttat 166  Q
    ||||||||||||| ||||||| ||||   |||||| ||||||||||||||||||||||||| ||||    
T  28675220 tcataaatttgagaattccctgctaa---atcactagtgattgtggccatcttgttttgaggttat 28675282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 28651254 - 28651369
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| | ||||| |||||||||| ||    
T  28651254 ttcacaatagaacatgcgtggaacttttgttactccattttctacaagtccttggacaccaacctttgactcatcaaactcctttagttcactttttttg 28651353  T
Q  101 tcataaatttgagcat 116  Q
    ||||||||| ||||||    
T  28651354 tcataaattggagcat 28651369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 28642393 - 28642508
Alignment:
Q  1 ttcagaatagaacatacgtggaacttttgttactccattttctatgagtccttggacaccaacctttgactcatcaaatttctttatttcactttttctg 100  Q
    |||| ||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| | ||||| |||||| ||| ||    
T  28642393 ttcacaatagaacatgtgtggaacttttgttactccattttctacaagtccttggacaccaacctttgactcatcaaactcctttagttcactctttttg 28642492  T
Q  101 tcataaatttgagcat 116  Q
    ||||||||| ||||||    
T  28642493 tcataaattggagcat 28642508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University