View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11907_low_5 (Length: 565)

Name: NF11907_low_5
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11907_low_5
NF11907_low_5
[»] chr5 (20 HSPs)
chr5 (2-564)||(25469351-25469914)
chr5 (374-558)||(25477683-25477867)
chr5 (12-295)||(32739877-32740160)
chr5 (12-292)||(28474647-28474927)
chr5 (15-295)||(32767690-32767970)
chr5 (12-295)||(32762787-32763070)
chr5 (20-274)||(32858044-32858298)
chr5 (230-295)||(32651841-32651906)
chr5 (10-117)||(32558074-32558181)
chr5 (377-513)||(32660658-32660796)
chr5 (376-427)||(32748035-32748086)
chr5 (376-427)||(32752079-32752130)
chr5 (455-551)||(32858859-32858955)
chr5 (316-349)||(25477534-25477567)
chr5 (12-129)||(32656262-32656379)
chr5 (375-423)||(32655772-32655820)
chr5 (227-295)||(32656096-32656164)
chr5 (12-129)||(32662149-32662266)
chr5 (316-349)||(32740175-32740208)
chr5 (398-510)||(32763290-32763402)
[»] chr1 (2 HSPs)
chr1 (12-295)||(17583287-17583570)
chr1 (12-295)||(17591194-17591477)
[»] chr7 (4 HSPs)
chr7 (2-295)||(7969922-7970216)
chr7 (12-295)||(37576906-37577189)
chr7 (378-498)||(32895003-32895123)
chr7 (455-500)||(7969502-7969547)
[»] chr2 (3 HSPs)
chr2 (77-295)||(16756838-16757056)
chr2 (31-295)||(16752281-16752551)
chr2 (457-498)||(16752844-16752885)
[»] chr4 (1 HSPs)
chr4 (20-154)||(21524345-21524479)


Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 2 - 564
Target Start/End: Original strand, 25469351 - 25469914
Alignment:
Q  2 tctccttga-ttctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  25469351 tctccttgaattctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgtttttgggaaacgcggt 25469450  T
Q  101 caatgtttgctgcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtg 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |    
T  25469451 caatgtttgctgcattggtccaaaatcttctgagtccaagtatagttataatattttagcttgttctaagatgagtgagctgaaatttcacacttttgcg 25469550  T
Q  201 aagaatgtccaacaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcatcagat 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25469551 aagaatgtccaacgggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcatcagat 25469650  T
Q  301 cacttccttgtgattccatggtacctcctatatccttttctttactttgnnnnnnncccctattaaattcttctatcattgattactgtgttggcaattg 400  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  25469651 catttccttgtgattccatggtacctcctatatccttttctttactttgtttttttcccctattaaattcttctatcattgattactgtgttggcaattg 25469750  T
Q  401 tggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacacgatatacagtgtgaaggagaagatttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25469751 tggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacacgatatacagtgtgaaggagaagatttt 25469850  T
Q  501 taacaaggaaaagtacgcaataatcgatcaacgtctgatcttttccggtaatcaactacctgat 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25469851 taacaaggaaaagtacgcaataatcgatcaacgtctgatcttttccggtaatcaactacctgat 25469914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 374 - 558
Target Start/End: Original strand, 25477683 - 25477867
Alignment:
Q  374 tatcattgattactgtgttggcaattgtggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacac 473  Q
    |||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||   ||||  | |||||| | ||||||||||||||||||||||||||    
T  25477683 tatcattgattaatgtgttggcaattgcggtgcagatgctaatattcataaagaccatggaaagtaaggtgatccccttgagggttaagagttcagacac 25477782  T
Q  474 gatatacagtgtgaaggagaagatttttaacaaggaaaagtacgcaataatcgatcaacgtctgatcttttccggtaatcaacta 558  Q
    |||| ||||||||||||||||||||||| ||||||||||||||  | | | ||||||||||||||| ||||||||||| ||||||    
T  25477783 gatagacagtgtgaaggagaagatttttgacaaggaaaagtaccaagtgaacgatcaacgtctgatattttccggtaagcaacta 25477867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 32739877 - 32740160
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||||||||||||| ||||||||| |||| |||| |||| | || ||||||| ||||| |||| ||||| | | || ||||| || |||||| ||||||    
T  32739877 tctaatgatgaaaccattgttcttcgagaggaaaatgatgacaaactatttattctcaataatagtactacgttgttaggaaatgctgtcaatatttgct 32739976  T
Q  112 gcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtcca 211  Q
    || |||||||| |  ||||||||||   |||||||||  |||| || |||   ||| ||||  |||| ||| |||| ||| | ||||  |||||||||||    
T  32739977 gctttggtccagacgcttctgagtctgagtatagttacgatatattggctacgtctcagatatgtaaactgaaattacactcttttgccaagaatgtcca 32740076  T
Q  212 acaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    |||| |||||||   || ||||||||||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||    
T  32740077 acagattactttagcaaatctttcatcaaagttccttgtgattccatttagttcttctgaacctctcaagttagaaatttgcat 32740160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 28474647 - 28474927
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||||||||||||| |||||||||||||| |||  || ||| || ||||||| ||||| ||||  || |  ||||||||||| | ||||||| ||||||    
T  28474647 tctaatgatgaaaccattgttcttcaagaggaaactgagggcaaactatttattctcaataatagaaccacacttttgggaaatggagtcaatatttgct 28474746  T
Q  112 gcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtcca 211  Q
    |||||||||| || ||||||||||||  |||||||||| |||| || ||| | ||| ||||  | || |||   || ||  | ||||||||||| |||||    
T  28474747 gcattggtcctaactcttctgagtccgagtatagttatgatatattggctaggtctcagatatgcaaactgactttacagtcttttgtgaagaacgtcca 28474846  T
Q  212 acaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttg 292  Q
    | ||||| ||||   ||||| ||||||| |||| ||||||||||||||||||| ||| ||||||||| || |||| |||||    
T  28474847 agaggttgctttagcaactccttcatcagagttgcttgtgattccatttggttcttccgaacctctcaagctagatatttg 28474927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 32767690 - 32767970
Alignment:
Q  15 aatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgctgca 114  Q
    |||||| || || |||||||||| ||| |||| |||||| || ||||||| ||||| |||| |||||| ||||| ||||| |||||| || |||||||||    
T  32767690 aatgatcaagccattgttcttcaggaggaaaatgatggcaaactatttattctcaataatagtactatacttttaggaaatgcagtctatatttgctgca 32767789  T
Q  115 ttggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtccaaca 214  Q
    ||||||| || || |||||||||  |||||||||| |||| || ||| | ||| |||   | || ||| |||| ||  | |||||||| |||||||| ||    
T  32767790 ttggtcctaactcctctgagtccgagtatagttatgatatattggctaggtctcagacatgcaaactgaaattacagtcttttgtgaaaaatgtccagca 32767889  T
Q  215 ggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    | |||||||   ||||||| ||||| || |||||||||||||| |||| | ||||||||| ||| || |||||||||||||    
T  32767890 gtttactttagcaactcttccatcagagctccttgtgattccagttggctcttctgaaccactcaagctagaaatttgcat 32767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 32762787 - 32763070
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||||||||||||| |||| ||||||||| |||| |||||| || | ||||| ||||| ||||  ||||  ||||| ||||| ||||||||| ||||||    
T  32762787 tctaatgatgaaaccattgtccttcaagaggaaaatgatggcaaactgtttattctcaataatagaactacacttttaggaaatgcagtcaatatttgct 32762886  T
Q  112 gcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtcca 211  Q
    || | ||||| || |||||||||||   |||||||||| |||| || ||| | ||| ||||  | || ||| |||| ||  | ||||||||||| |||||    
T  32762887 gcctcggtcctaactcttctgagtctgagtatagttatgatatattggctagctctcagatatgcaaactgaaattacagtcttttgtgaagaacgtcca 32762986  T
Q  212 acaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    ||  ||| ||||   ||||||||||||| |||| |||||||||||||||| || ||| ||||||||| || |||| ||||||||    
T  32762987 acgtgttgctttagcaactctttcatcagagtttcttgtgattccatttgcttcttccgaacctctcaagctagatatttgcat 32763070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 32858044 - 32858298
Alignment:
Q  20 tgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgctgcattggt 119  Q
    ||||||| ||||||||||| || |||| |||||| || ||||||| ||||| |||| |||| ||  ||| ||||| ||||| ||| |||| |||||||||    
T  32858044 tgaaaccattgttcttcaaaaggaaaatgatggcaaactatttattctcaataatagtactctgagtttaggaaatgcagttaatatttgttgcattggt 32858143  T
Q  120 ccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtccaacaggtta 219  Q
    || || |||| ||| |||| |||||||| | |||| |  ||| | ||| ||||  | ||  || |||| ||  | ||||||||  | ||||||| | |||    
T  32858144 cctaactcttgtgaatccaagtatagttctgatatatcggctaggtctcagatatgcaaattgaaattacagtcttttgtgaaatacgtccaacggttta 32858243  T
Q  220 ctttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacc 274  Q
    ||||   ||||||||||||| ||| |||||||||||||||||||| || ||||||    
T  32858244 ctttagcaactctttcatcagagtgccttgtgattccatttggttcttttgaacc 32858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 32651906 - 32651841
Alignment:
Q  230 tctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||  || |||||||||||||    
T  32651906 tctttcatcagagttccttgtgattccatttggttcttctgaacctctgaagctagaaatttgcat 32651841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 32558181 - 32558074
Alignment:
Q  10 attctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttg 109  Q
    |||||||||||||| | | ||||||||||||| |||| |||||  || ||||||  ||||| |||| |||||||||| ||||||| ||||||||| || |    
T  32558181 attctaatgatgaagctgctgttcttcaagaggaaaatgatgggaaactatttactctcaataatagtactatgcttctgggaaatgcagtcaatattag 32558082  T
Q  110 ctgcattg 117  Q
    ||||||||    
T  32558081 ctgcattg 32558074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 513
Target Start/End: Complemental strand, 32660796 - 32660658
Alignment:
Q  377 cattgattactgtgttggcaattgtggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacacgat 476  Q
    ||||||||| |||||||||||||| | | ||||||||||| ||||||| ||   ||  | |||||    | |||||||||||||| |||||| |||| ||    
T  32660796 cattgattaatgtgttggcaattgcgatgcagatgcaaattttcataatgaccatgactagaaagaatatccccttgagggttaatagttcatacacaat 32660697  T
Q  477 ata--cagtgtgaaggagaagatttttaacaaggaaaag 513  Q
    |||  |||||||||||||||||||||| || ||||||||    
T  32660696 ataatcagtgtgaaggagaagatttttgacgaggaaaag 32660658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 32748035 - 32748086
Alignment:
Q  376 tcattgattactgtgttggcaattgtggtacagatgcaaatattcataaaga 427  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  32748035 tcattgattaatgtgttggcaattgcggtgcagatgcaaatattcataaaga 32748086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 32752079 - 32752130
Alignment:
Q  376 tcattgattactgtgttggcaattgtggtacagatgcaaatattcataaaga 427  Q
    |||||||||| |||||||||||||| || |||||||||||||||||||||||    
T  32752079 tcattgattaatgtgttggcaattgcggcacagatgcaaatattcataaaga 32752130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 551
Target Start/End: Original strand, 32858859 - 32858955
Alignment:
Q  455 gggttaagagttcagacacgatatacagtgtgaaggagaagatttttaacaaggaaaagtacgcaataatcgatcaacgtctgatcttttccggtaa 551  Q
    |||||||||||||||||||||||  || ||||||||||| |||| || |||||||||| |   |||||  ||  ||||||||||| |||||||||||    
T  32858859 gggttaagagttcagacacgatagtcaatgtgaaggagatgattcttgacaaggaaaaattaccaatacacggccaacgtctgatattttccggtaa 32858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 25477534 - 25477567
Alignment:
Q  316 ccatggtacctcctatatccttttctttactttg 349  Q
    ||||||||||||||||||||||||||||||||||    
T  25477534 ccatggtacctcctatatccttttctttactttg 25477567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 32656379 - 32656262
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||| ||||||||| ||||| |||||||| |||   ||||| || ||||||| ||||| ||||   ||| |||||||||||| ||  ||||| ||||||    
T  32656379 tctaaggatgaaaccattgtttttcaagaggaaagttatggcaaactatttattctcaataatagagctacgcttttgggaaatgctatcaatatttgct 32656280  T
Q  112 gcattggtccaaaatctt 129  Q
    | ||||||||||| ||||    
T  32656279 gtattggtccaaactctt 32656262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 32655820 - 32655772
Alignment:
Q  375 atcattgattactgtgttggcaattgtggtacagatgcaaatattcata 423  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||    
T  32655820 atcactgattaatgtgttggcaattgcggtgcagatgcaaatattcata 32655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 32656164 - 32656096
Alignment:
Q  227 aactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    ||||||||| ||  |||| ||||||||||||||||||| || |||| ||||| || |||||||||||||    
T  32656164 aactctttcgtcggagttgcttgtgattccatttggttcttttgaagctctcaagctagaaatttgcat 32656096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 32662266 - 32662149
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||||||||||||| ||||| |||||||| |||   ||||| || ||||||| ||| | ||||   |||  ||||||||||| ||  ||||| ||||||    
T  32662266 tctaatgatgaaaccattgtttttcaagaggaaacttatggcaaactatttattctctataatagagctacacttttgggaaatgctatcaatatttgct 32662167  T
Q  112 gcattggtccaaaatctt 129  Q
    | ||||||||||| ||||    
T  32662166 gtattggtccaaactctt 32662149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Original strand, 32740175 - 32740208
Alignment:
Q  316 ccatggtacctcctatatccttttctttactttg 349  Q
    |||||||||||||||||||||||||||| |||||    
T  32740175 ccatggtacctcctatatccttttctttgctttg 32740208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 510
Target Start/End: Original strand, 32763290 - 32763402
Alignment:
Q  398 ttgtggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacacgatatacagtgtgaaggagaagat 497  Q
    ||||||| ||||||||||| | | ||||  | |||  ||||||| || | |||||||||||| ||||||||||||| ||| | | ||||||| | |||||    
T  32763290 ttgtggtgcagatgcaaatctacgtaaaagacctgactggaaagatgatccccttgagggttgagagttcagacacaatagaaaatgtgaagaaaaagat 32763389  T
Q  498 ttttaacaaggaa 510  Q
    | || ||||||||    
T  32763390 tcttgacaaggaa 32763402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 17583287 - 17583570
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||||||||||||| |||||||||||||| |||| |||||  || ||||||| ||||| ||||  | ||||||||||||||| ||||||||| ||||||    
T  17583287 tctaatgatgaaaccattgttcttcaagaggaaaatgatggtaaactatttattctcaataatagaagtatgcttttgggaaatgcagtcaatctttgct 17583386  T
Q  112 gcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtcca 211  Q
    |||||||||| || ||||||||||||   ||||||||| |||| || ||| | ||| ||||    || ||| |||| ||  | || |||||||| |||||    
T  17583387 gcattggtcctaactcttctgagtccgactatagttatgatatattggctaggtctcagatatccaaactgaaattacagtctttcgtgaagaacgtcca 17583486  T
Q  212 acaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    ||||||| ||||   ||||||||||||| |||| ||||||||||||||||||| ||||||||||||| || |||| ||||||||    
T  17583487 acaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacctctcaagctagatatttgcat 17583570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 17591194 - 17591477
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    |||||||||||||   |||||||||||||| |||| |||||  || ||||||| ||||| ||||  |||| |||||||||||| ||||||||| ||||||    
T  17591194 tctaatgatgaaattattgttcttcaagaggaaaatgatggtaaactatttattctcaataatagaactacgcttttgggaaatgcagtcaatctttgct 17591293  T
Q  112 gcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtcca 211  Q
    |||||||||| || |||||||||||||  |||| |||| |||| || ||| | ||| |||   | |  ||| |||| ||  | |||| |||||| |||||    
T  17591294 gcattggtcctaactcttctgagtccaactataattatgatatattggctaggtctcagaattgcatactgaaattacagtcttttgcgaagaacgtcca 17591393  T
Q  212 acaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    ||| ||||||||   ||||||||||||| |||| ||||||||||||||||||| ||||||||||||| || |||| ||||||||    
T  17591394 acaagttactttagcaactctttcatcagagttgcttgtgattccatttggttcttctgaacctctcaagctagatatttgcat 17591477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 7970216 - 7969922
Alignment:
Q  2 tctccttgat-tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagt 100  Q
    |||||||||| ||||||| ||||||| |||||||||||||| |||| || ||  || ||||||| || || || | |||||||  ||||||||| |||||    
T  7970216 tctccttgatgtctaatggtgaaaccattgttcttcaagaggaaaatgacggaaaactatttattctaaataacaatactatgagtttgggaaaagcagt 7970117  T
Q  101 caatgtttgctgcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtg 200  Q
    |||| |||||||||||||||| || ||||||| ||||  |||||||||| |||| |  |||   ||| ||||  | || ||| |||| ||  | |||| |    
T  7970116 caatatttgctgcattggtcctaactcttctgggtccgagtatagttatgatatatcggctaagtctgagatatgcaaactgaaattacagtcttttgcg 7970017  T
Q  201 aagaatgtccaacaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    ||||| ||||||||| |||||||   ||||||||||||| |||||||||||||||||||| ||| ||||||||||||| || |||| ||||||||    
T  7970016 aagaacgtccaacagtttactttagcaactctttcatcagagttccttgtgattccatttcgttcttctgaacctctcaagctagacatttgcat 7969922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 37576906 - 37577189
Alignment:
Q  12 tctaatgatgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgct 111  Q
    ||||||||||||||  |||||||||||||||| || | |||| || ||||||| ||||| |||| |||||||||||| ||||| ||| ||||| |||| |    
T  37576906 tctaatgatgaaactattgttcttcaagagaataatgttggcaaactatttattctcaataatagtactatgctttttggaaatgcaatcaatatttgtt 37577005  T
Q  112 gcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtcca 211  Q
    ||||| ||||||| |||||| ||| |  || | ||||| |||| || ||| | ||| |     | || | | |||||||  | |||| ||||||||| ||    
T  37577006 gcattagtccaaagtcttctcagtacgagtgtggttatgatatattggctagatctcaagcatgcaaaccgaaatttcagtcgtttgcgaagaatgtgca 37577105  T
Q  212 acaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
    || | |||||||   ||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  37577106 acggtttactttatcaactctttcattagagttccttgtgattccatttggttcttctgaacctctcgagctagaaatttgcat 37577189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 498
Target Start/End: Original strand, 32895003 - 32895123
Alignment:
Q  378 attgattactgtgttggcaattgtggtacagatgcaaatattcataaagaagctggatggaaaggtgttacccttgagggttaagagttcagacacgata 477  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||| |||  | || |||| ||  ||| ||| ||| ||||||||||||||||| ||||    
T  32895003 attgattaatgtgttggcaattgcggtgcagatgcaaatattcatagagacccagggtggagagaggttccccctgatggttaagagttcagacaggata 32895102  T
Q  478 tacagtgtgaaggagaagatt 498  Q
    | || ||| | ||||||||||    
T  32895103 ttcaatgtaatggagaagatt 32895123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 500
Target Start/End: Complemental strand, 7969547 - 7969502
Alignment:
Q  455 gggttaagagttcagacacgatatacagtgtgaaggagaagatttt 500  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||    
T  7969547 gggttaagagttcagacacaataggcaatgtgaaggagaagatttt 7969502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 295
Target Start/End: Original strand, 16756838 - 16757056
Alignment:
Q  77 tactatgcttttgggaaacgcagtcaatgtttgctgcattggtccaaaatcttctgagtccaggtatagttataatattttagcttgttctaagatgagt 176  Q
    |||||||||||||||||| ||||||||| |||| ||| |||||||||   |||||| ||||  |||||||||| |||| |  ||| | ||| |||   |     
T  16756838 tactatgcttttgggaaatgcagtcaatatttgttgctttggtccaactgcttctgtgtccgagtatagttatgatatatcggctaggtctcagaaatgc 16756937  T
Q  177 aagctggaatttcacacatttgtgaagaatgtccaacaggttactttgaaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctc 276  Q
    || ||| |||| ||| | ||||  |||||| | || || ||||||||   ||||||||||||| ||||||||||||||||| |||||| |||||||||||    
T  16756938 aaactgaaattacactcgtttgcaaagaatttgcatcaagttactttagcaactctttcatcagagttccttgtgattccaattggttcttctgaacctc 16757037  T
Q  277 tcgagatagaaatttgcat 295  Q
    ||||| | | |||||||||    
T  16757038 tcgagcttgtaatttgcat 16757056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 31 - 295
Target Start/End: Original strand, 16752281 - 16752551
Alignment:
Q  31 ttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactat------gcttttgggaaacgcagtcaatgtttgctgcattggtccaaa 124  Q
    |||||||||||||| | |||||| || ||||||| ||||  |||| ||||||      ||||||||| || ||||||||| |||||||| ||||||||||    
T  16752281 ttcttcaagagaaatatgatggcaaactatttattctcattaatagtactatcactacgcttttggggaatgcagtcaatatttgctgctttggtccaaa 16752380  T
Q  125 atcttctgagtccaggtatagttataatattttagcttgttctaagatgagtaagctggaatttcacacatttgtgaagaatgtccaacaggttactttg 224  Q
      |||| ||||||  ||||||||||  |||    ||  | ||| |||   | || ||| |||| ||| | ||||| | |||||||||||||||||||||     
T  16752381 tgcttccgagtccgagtatagttatggtatcaaggccaggtctcagagatgcaaactgaaattacactcttttgtaacgaatgtccaacaggttacttta 16752480  T
Q  225 aaaactctttcatcaaagttccttgtgattccatttggtttttctgaacctctcgagatagaaatttgcat 295  Q
      |||||||||| || |||||||| ||||||||  ||||| |||  |||||||| || |||||||||||||    
T  16752481 ggaactctttcaccagagttccttatgattccaaatggttcttccaaacctctcaagctagaaatttgcat 16752551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 16752844 - 16752885
Alignment:
Q  457 gttaagagttcagacacgatatacagtgtgaaggagaagatt 498  Q
    |||||||||| ||||||||||| ||||||||||||| |||||    
T  16752844 gttaagagtttagacacgatattcagtgtgaaggagcagatt 16752885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 21524345 - 21524479
Alignment:
Q  20 tgaaaccgttgttcttcaagagaaaaacgatggccaattatttatcctcaaaaatattactatgcttttgggaaacgcagtcaatgtttgctgcattggt 119  Q
    ||||||| |||||||||||||| |||| |||||| || ||||||| ||||| |||| |||||||  ||| ||||| ||||| ||| |||| |||||||||    
T  21524345 tgaaaccattgttcttcaagaggaaaatgatggcaaactatttattctcaataatagtactatgagtttaggaaatgcagttaatatttgttgcattggt 21524444  T
Q  120 ccaaaatcttctgagtccaggtatagttataatat 154  Q
    |  || |||| |||||||| |||||||||| ||||    
T  21524445 cataactcttttgagtccaagtatagttatgatat 21524479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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