View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_low_6 (Length: 545)
Name: NF11907_low_6
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 92 - 526
Target Start/End: Original strand, 2666547 - 2666983
Alignment:
| Q |
92 |
tgtactagcacgtgctccgatgctcaaattagtgagggatgaaaagagtgaagcaaatataagggtaaatagtgaaataaatgaa-ccaacgctatgcat |
190 |
Q |
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| T |
2666547 |
tgtactagcacgtgctccgatgctcaaattggtgagtgatgaaaagagtgaagcaaatataagggtaaatagtgaaataaatgaaaccaacgctatgcat |
2666646 |
T |
|
| Q |
191 |
tagtatttataggggaaaaataggattttaggttgttagaccttcacgtgaacatgtgtcctcaatcgacactt-gtaatgatttgtgggtagtgatcct |
289 |
Q |
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| T |
2666647 |
tagtatttataggggataaataggattttaggttgttagaccttcacgtgaacatgtgtcctcaatagacactttgtaatgatttgtgggtcgtgatcct |
2666746 |
T |
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| Q |
290 |
aactaagttacaacataggattccaactcgaaggtccatatattaaaaaatttggatcgtgatctagtgagatttagggcatgttcataatatgggttca |
389 |
Q |
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| T |
2666747 |
aactaagttacaacataggattccaactcgaaggtccatatattaaaaaatttggatcgtgatccagtgagatttagggcatgttcataatatgggttca |
2666846 |
T |
|
| Q |
390 |
ccgcatgatcataatatggagggagttcggatcctaacatggattgagccttgacccagtccgaaacatttgattatgttgaaattggtctctacaatat |
489 |
Q |
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| T |
2666847 |
ccgcatgatcataatatggagggagttcggatcctaacatggattgagccttgacccagtccgaaacatttgattatgttgaaattggtctctataatat |
2666946 |
T |
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| Q |
490 |
gttcaacttttgattttaaatcctctaatatgggcta |
526 |
Q |
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| T |
2666947 |
gttcaacttttgattttaaatcctctactatgagcta |
2666983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 2666448 - 2666514
Alignment:
| Q |
20 |
aggaatatggcatgagggttgagtgctattgcgaagaaggaggaatctattgtaagttcactgtggt |
86 |
Q |
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| T |
2666448 |
aggaatatggtatgagggttgagtgctattgcaaagaaggaggaatctatcgtaagttcactgtggt |
2666514 |
T |
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