View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_low_7 (Length: 502)
Name: NF11907_low_7
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 1316797 - 1317184
Alignment:
| Q |
10 |
agatggacatcacaaactgtagcctacatattaattacaacagtattcatggtgtacaatccatcgacaaataacacattattatagcttatagatatat |
109 |
Q |
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| T |
1316797 |
agatgaacataacaaactgtagcctacatattaattacaacagtattcatggtgtaaaatccatcgacaaataacacattattatagcttatagatatat |
1316896 |
T |
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| Q |
110 |
atatgaacaacctattacaccaaaatgaacaatgtgttgatccttaaaatatatcataaatcccaatagtttattgctgtgataacgaatccgtcaaaat |
209 |
Q |
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| T |
1316897 |
atatgaacaacctattacaccaaaatgaacaatgtgttgatccttaaaatatatcataaatcccaatag-ttattgctgtgataacgaatccgtcaaaat |
1316995 |
T |
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| Q |
210 |
gatgtgatctttcatgagaatattggctatggttggcttgaatattgttgtctacaaataaataacaagaaataaaagtgagcatgacatgcttcaaata |
309 |
Q |
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| T |
1316996 |
gatgtgatctttcatgagaatatcggctatggttggcttgaatattgttgtctacaaataaataaaaagaaataaaaatgagcatgacatgcttcaaata |
1317095 |
T |
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| Q |
310 |
atatagagtttgatagtagtttattattaattaattataaacagctttaacacgaacattaacccgatcatattttagtgtcttttatcatgt |
402 |
Q |
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| T |
1317096 |
atatagagtttgatagtagtttatt----attaattataaacaggtttaacacgaacattaacccgatcatattttagtgtcttttatcatgt |
1317184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 402 - 481
Target Start/End: Original strand, 1317785 - 1317865
Alignment:
| Q |
402 |
tttaaatatta-gtttagaaaatatactccatcccttttattcataaaccgtttgtgggtgtaaaatgatgtttataataa |
481 |
Q |
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| T |
1317785 |
tttaaatattaagtttagaaaatatactccaccccttttattcataaaccgtttgtgggtgtaaaatgatgtttataataa |
1317865 |
T |
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