View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11907_low_8 (Length: 483)
Name: NF11907_low_8
Description: NF11907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11907_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 13706684 - 13706237
Alignment:
| Q |
14 |
cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat |
113 |
Q |
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|||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13706684 |
cacaaacacaattggtaaccacttccaaaaaccaaacaaaatatccatggcaactttattagtaataaacaaagacaacaccttaagggttactatatat |
13706585 |
T |
|
| Q |
114 |
cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||| |
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| T |
13706584 |
cttctccattaggtcaatttcctgctttataggaatttcaggaaaaaactccattccatttgatctaaacccacttgccattc---catcatcatcattg |
13706488 |
T |
|
| Q |
214 |
aacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
313 |
Q |
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||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13706487 |
aacatcattggcacatagccaccaattccatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
13706388 |
T |
|
| Q |
314 |
tattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaact |
413 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
13706387 |
tattcatcatgctcggagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagcagtgttccctttgaact |
13706288 |
T |
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| Q |
414 |
gttacctcgattctttttcttggctttctggcggcgcttagtggcgttcca |
464 |
Q |
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| T |
13706287 |
gttacctcgattctttttcttggctttctggcgtcgcttagtggtgttcca |
13706237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 13644235 - 13643788
Alignment:
| Q |
14 |
cacagacacaattgataaccacttccaaaaaccaaataaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggttactatatat |
113 |
Q |
| |
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|||| ||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13644235 |
cacaaacacaattggtaaccactttcaaacaccaaacaaaatatccatggcaactttattggtaataaacaaagacaacaccttaagggtttctatatat |
13644136 |
T |
|
| Q |
114 |
cttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaacccatttttcattctatcatcatcatcattg |
213 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
13644135 |
cttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaacccacttgccattc---catcatcatcattg |
13644039 |
T |
|
| Q |
214 |
aacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
313 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13644038 |
aacatcattggcacatagccaccaatttcatcttctggagtagtcaaaccttcagagaaaaaatcactctcagaactttcataatttggctgattcccga |
13643939 |
T |
|
| Q |
314 |
tattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagtgttgcctttgaact |
413 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||| |
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| T |
13643938 |
tattcatcatgctcagagaattagtcatcatctccttttcaactttcttggcacaagtgacttccattatgtatttcaaaagcagtgttccctttgaact |
13643839 |
T |
|
| Q |
414 |
gttacctcgattctttttcttggctttctggcggcgcttagtggcgttcca |
464 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
13643838 |
gttacctcgattctttttcttggctttcaggcagcgcttagtggcgttcca |
13643788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 200 - 464
Target Start/End: Original strand, 17173704 - 17173968
Alignment:
| Q |
200 |
catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt |
299 |
Q |
| |
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|||||||| |||||||||||| ||| ||||| ||| ||||| | | |||||||| ||||||||||| ||||||||||| || |||||| |||| |
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| T |
17173704 |
catcatcaccattgaacatcattggaacatactcacaaattttgttctctggagtagtcaaaccttcagttctaaaatcactctttgagctttcaaaatt |
17173803 |
T |
|
| Q |
300 |
tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt |
399 |
Q |
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| ||||| |||| |||||||||| ||||| ||||| |||||||||||||| ||| ||| || ||||||||||||||||||| ||| ||| |
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| T |
17173804 |
cagttgatttttaatatccatcatgctcgtagaatacgtcatcggctccttttcaacttccttagcatcggtgacttccattatgtatttcagaagaagt |
17173903 |
T |
|
| Q |
400 |
gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttcca |
464 |
Q |
| |
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|| |||||||||| |||||||| ||||| |||||| || ||||| ||||||||||| ||||| |
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| T |
17173904 |
attccctttgaactcttacctcggttcttcctcttgggattttggcgacgcttagtggcattcca |
17173968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 13425399 - 13425467
Alignment:
| Q |
199 |
tcatcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttca |
267 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||| ||||||| |||||||| | ||||| |||||||||| |
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| T |
13425399 |
tcataatcatcattgaacgtcattggcacatatccaccaagttcatcttctaaagtagtcaaaccttca |
13425467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 17173578 - 17173666
Alignment:
| Q |
95 |
cttaagggttactatatatcttctccatgaggtcaatttcctgctttataggaattttaggaaaaaactccattccatttgatccaaac |
183 |
Q |
| |
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|||||||||| ||| ||| |||||||||| |||||||| || || | ||||| | |||||||||||| ||||||| |||||||||| |
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| T |
17173578 |
cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaac |
17173666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 200 - 464
Target Start/End: Original strand, 34653473 - 34653737
Alignment:
| Q |
200 |
catcatcatcattgaacatcaatggcacatagccaccaatttcatcttttggagtagacaaaccttcagagaaaaaatcactctcagaactttcataatt |
299 |
Q |
| |
|
|||||||| |||||||||||| ||| |||| ||| ||||||| || |||||| || ||||||||||||| |||||||||||| || |||||| | || |
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| T |
34653473 |
catcatcaccattgaacatcattggagcatacccatcaatttcctcatttggattaaccaaaccttcagagctaaaatcactctccgagctttcaaagtt |
34653572 |
T |
|
| Q |
300 |
tggctgattcccgatattcatcatgctcagagaattattcatcatctccttttcaactttcttggcagaagtaacttccattatgtatttcaaaagtagt |
399 |
Q |
| |
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||| |||||||| | ||||||| |||| |||||| |||||| |||||||||| ||| ||| ||| | | |||||||||||||||||||| |||||| |
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| T |
34653573 |
tgggtgattcccaaatttcatcacgctcgtagaattcgtcatcagctccttttcagcttccttagcatcattgacttccattatgtatttcaagagtagt |
34653672 |
T |
|
| Q |
400 |
gttgcctttgaactgttacctcgattctttttcttggctttctggcggcgcttagtggcgttcca |
464 |
Q |
| |
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|| |||||||||| |||| ||||||||| |||| | || ||||||||||| ||||||||||| |
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| T |
34653673 |
tttccctttgaactattactccgattctttctcttagtattatggcggcgcttggtggcgttcca |
34653737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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