View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11909_high_12 (Length: 375)
Name: NF11909_high_12
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_high_12 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 11783950 - 11784308
Alignment:
| Q |
1 |
cttaatgatttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11783950 |
cttaatgatttgcagggactaggcttgttaacattgtcggctatgctgccttccattacaatttattctcctcagtcacaagtaatgttattcttcttct |
11784049 |
T |
|
| Q |
101 |
cactctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11784050 |
cactctatctagttgccattggacaaggtggacataaaccttgtgttcaagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagc |
11784149 |
T |
|
| Q |
201 |
tagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
11784150 |
tagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggtt |
11784249 |
T |
|
| Q |
301 |
cttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
11784250 |
cttggatttggaataccttgtgttgtaatgatcattgctttgattgttttcttgcttgg |
11784308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 359
Target Start/End: Original strand, 11787782 - 11788139
Alignment:
| Q |
2 |
ttaatgatttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctc |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| |||| |
|
|
| T |
11787782 |
ttaatgaattgcagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctc |
11787881 |
T |
|
| Q |
102 |
actctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagct |
201 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
11787882 |
actctatctaattgccattggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaatttgacgaaaaacatcctaaggaacatagagct |
11787981 |
T |
|
| Q |
202 |
agaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttc |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11787982 |
agaagctcattctttaattggtggtattttacaatggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttg |
11788081 |
T |
|
| Q |
302 |
ttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||| |
|
|
| T |
11788082 |
ttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattgg |
11788139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 359
Target Start/End: Original strand, 11799949 - 11800306
Alignment:
| Q |
2 |
ttaatgatttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctc |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||| |||| |
|
|
| T |
11799949 |
ttaatgaattgcagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctc |
11800048 |
T |
|
| Q |
102 |
actctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagct |
201 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
11800049 |
actctatctaattgccattggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaatttgacgaaaaacatcctaaggaacatagagct |
11800148 |
T |
|
| Q |
202 |
agaagctcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttc |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11800149 |
agaagctcattctttaattggtggtattttacaatggttgcaggtgcctcggcaacacttttaatcttgagttatatacaagataactatagttgggttg |
11800248 |
T |
|
| Q |
302 |
ttggatttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||| |
|
|
| T |
11800249 |
ttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttgattgg |
11800306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 11697775 - 11698121
Alignment:
| Q |
13 |
cagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctcactctatctag |
112 |
Q |
| |
|
||||||||||||||||||||| | || |||||||| ||||| | |||| || |||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
11697775 |
cagggactaggcttgttaacattatcagctatgcttccttcactcacatcttgttctactcaatcacaagtaatcttattcttcatctcactctatctag |
11697874 |
T |
|
| Q |
113 |
ttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcatt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
11697875 |
tagccattggacaaggtggacataaaccttgtgttcaagctttcggggctgaccaattcgacgaaaaatatcctaaggagcacaaagctagaagctcatt |
11697974 |
T |
|
| Q |
213 |
ctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttcttggatttgga |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697975 |
ctttaattggtggtattttactatggttgcaggtgccgcggcaacactttcgatcttgacttatatacaagataactatagttgggttcttggatttgga |
11698074 |
T |
|
| Q |
313 |
ataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
|| ||||||||| ||||||| || || |||| ||||||||||||||| |
|
|
| T |
11698075 |
atcccttgtgttataatgatcatagccttgattgttttcttgcttgg |
11698121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 11707478 - 11707829
Alignment:
| Q |
8 |
atttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctcactcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| | || ||| |||| ||||| | ||||||| ||||||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
11707478 |
atttacagggactaggcttgttaacattatcagctttgctcccttcactcacattttgttctcctcaatcacaagtaatcttattcttcatctcactcta |
11707577 |
T |
|
| Q |
108 |
tctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
11707578 |
tctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggctgatcaattcgatgaaaaacatccaaaagagcacgaagctagaagc |
11707677 |
T |
|
| Q |
208 |
tcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttcttggat |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| | | ||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
11707678 |
tcattctttaattggtggtattttactatgattgcaggttgcacagcaacacttacgatcttgaactatatacaagataacattagttgggttcttggat |
11707777 |
T |
|
| Q |
308 |
ttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| |||||| |||||||| |
|
|
| T |
11707778 |
ttggaatcccttgtgttgtaatgatcatcgctttgattgtttttttgcttgg |
11707829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 11676255 - 11676606
Alignment:
| Q |
8 |
atttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctcactcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||| ||||| | |||| | ||||||| ||||||||||||| ||||| ||| ||||||| || |
|
|
| T |
11676255 |
atttacagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcacttta |
11676354 |
T |
|
| Q |
108 |
tctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagc |
207 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11676355 |
tctagtagccataggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaattcgacgaaaaacatcctaaggagcatagagctagaagc |
11676454 |
T |
|
| Q |
208 |
tcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttcttggat |
307 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||||||| | | ||| |||| |||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
11676455 |
tctttctttaattggtggtattttactatgattgcaggttgcacatcaatacttacaatcttgaactatatacaagataacattagttgggttcttggat |
11676554 |
T |
|
| Q |
308 |
ttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||| | |||||| |
|
|
| T |
11676555 |
ttggaatcccttgtgttgtaatgatcattgctttgattgttttttggcttgg |
11676606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 359
Target Start/End: Original strand, 11684534 - 11684885
Alignment:
| Q |
8 |
atttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctcactcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| | || |||||||| ||||| | |||| | ||||||| ||||||||||||| ||||| ||| ||||||| || |
|
|
| T |
11684534 |
atttacagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcacttta |
11684633 |
T |
|
| Q |
108 |
tctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagc |
207 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11684634 |
tctagtagccataggacaaggtggacataaaccttgtgttcaagctttcggggcggatcaattcgacgaaaaacatcctaaggagcatagagctagaagc |
11684733 |
T |
|
| Q |
208 |
tcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttcttggat |
307 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |||||||| | | ||| |||| |||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
11684734 |
tctttctttaattggtggtattttactatgattgcaggttgcacatcaatacttacaatcttgaactatatacaagataacattagttgggttcttggat |
11684833 |
T |
|
| Q |
308 |
ttggaataccttgtgttgtaatgattattgctttgactgttttcttgcttgg |
359 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||| | |||||| |
|
|
| T |
11684834 |
ttggaatcccttgtgttgtaatgatcattgctttgattgttttttggcttgg |
11684885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 19542 - 19890
Alignment:
| Q |
8 |
atttgcagggactaggcttgttaacactgtcggctatgctgccttccattacattttattctcctcagtcacaagtaatgttattcttcttctcactcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||| || ||||| | ||| || |||| |||| ||||||||||| ||||||||| | |||||||| |
|
|
| T |
19542 |
atttacagggactaggcttgttaacactatcaactattcttccttcactcgcatcttgttctactcaatcacaagtaatcttattcttcatttcactcta |
19641 |
T |
|
| Q |
108 |
tctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
19642 |
tctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggctgatcaattcgacgaaaaatatccggaggagcatagagctagaagc |
19741 |
T |
|
| Q |
208 |
tcattctttaactggtggtattttactatggttgcaggtgcctcggcaacacttttaatcttgacttatatacaagataactatagttgggttcttggat |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
19742 |
tcattctttaattggtggtattttactatggttgcaggggccacggcaacacttccgatcttgacttatattcaagataactatagctgggttcttggat |
19841 |
T |
|
| Q |
308 |
ttggaataccttgtgttgtaatgattattgctttgactgttttcttgct |
356 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||| | |||||||||| |
|
|
| T |
19842 |
ttggaataccttgtgttataatgatcattgccttgattattttcttgct |
19890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 6354 - 6275
Alignment:
| Q |
91 |
ttcttcttctcactctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttttggggcagatcaatt |
170 |
Q |
| |
|
|||||||| || || ||||||||||| ||| ||||||||||||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
6354 |
ttcttcttttctctttatctagttgcatttgcacaaggtggacataagccttgtgttcaggcatttggagctgatcaatt |
6275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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