View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_high_16 (Length: 335)
Name: NF11909_high_16
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 45205954 - 45205646
Alignment:
| Q |
3 |
ttaacaatatcggggataaaagtgatagtttgtacatcattgaaatatgtgtaatttacacttctgatccatctcaatcaacttatgtaacacatcaagt |
102 |
Q |
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| T |
45205954 |
ttaacaatatcagggataaaagtgatagtttgtacatcactgaaatatgtgtaatttacacttctgatccatctcaatcaacttatgtaacacatcaagt |
45205855 |
T |
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| Q |
103 |
aactattttactgnnnnnnnngtttgttgagaatttgactgtatcttttaatacataggatgagaagaagcaatatttctgattttatttatgaattatt |
202 |
Q |
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| T |
45205854 |
aactattttactgtttttt---tttgttgagaattttactgtatcttttaatacataggatgagaagaagcaatatttctgattttatttatgaattatt |
45205758 |
T |
|
| Q |
203 |
gtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtcgc |
302 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45205757 |
gtaattacgcaggtcattttctcttgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtcgc |
45205658 |
T |
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| Q |
303 |
ctcagaggctca |
314 |
Q |
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|||||||||||| |
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| T |
45205657 |
ctcagaggctca |
45205646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 45247389 - 45247291
Alignment:
| Q |
202 |
tgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
300 |
Q |
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| T |
45247389 |
tgtaattgtgcaggtcattttctcttgacaaatcttttgttggacacaatgaaaaaaacagcacaccaaagtaagaaagaaggaagaattgttaatgtc |
45247291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 45231554 - 45231456
Alignment:
| Q |
202 |
tgtaattatgcaggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
300 |
Q |
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||||||| | ||||||||||||| |||||||||||||||||||| || |||||||||||| ||| | ||||||| |||||||||||||||||||||||| |
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| T |
45231554 |
tgtaattgtacaggtcattttctcttgacaaatcttttgttggacacaatgaagaaaacagcacaccaaagtaaaaaagaaggaagaattgttaatgtc |
45231456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 45212608 - 45212504
Alignment:
| Q |
212 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtcgcctcagaggc |
311 |
Q |
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| T |
45212608 |
caggtcattttctcttgacaaatcttttgttggacactatgaagaaaacagctagtgaaagtaagactgaaggaagaattgttaatgtctcctcagaagc |
45212509 |
T |
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| Q |
312 |
tcaca |
316 |
Q |
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||||| |
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| T |
45212508 |
tcaca |
45212504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 19277506 - 19277418
Alignment:
| Q |
212 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
300 |
Q |
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| T |
19277506 |
caggtcattttcttttaacaaaccttttgttagacactatgaagaaaacagcaaatgaaagcaagaaagaaggaagaattattaatgtc |
19277418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 19294937 - 19294849
Alignment:
| Q |
212 |
caggtcattttctattgacaaatcttttgttggatactatgaagaaaacaacacgcaaaagtaagaaagaaggaagaattgttaatgtc |
300 |
Q |
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| T |
19294937 |
caggtcattttcttttaacaaaccttttgttagacactatgaagaaaacagctaatgaaagcaagaaagaaggaagaattattattgtc |
19294849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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