View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11909_high_27 (Length: 216)

Name: NF11909_high_27
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11909_high_27
NF11909_high_27
[»] chr4 (4 HSPs)
chr4 (1-202)||(40414514-40414715)
chr4 (101-202)||(24412802-24412903)
chr4 (105-202)||(24412925-24413022)
chr4 (101-151)||(26905348-26905398)
[»] chr8 (2 HSPs)
chr8 (101-202)||(44912664-44912765)
chr8 (101-202)||(44913647-44913748)
[»] chr6 (1 HSPs)
chr6 (143-202)||(5437824-5437883)
[»] chr1 (2 HSPs)
chr1 (143-202)||(30642664-30642723)
chr1 (143-202)||(30647482-30647540)
[»] chr3 (1 HSPs)
chr3 (111-182)||(22931763-22931834)
[»] chr5 (1 HSPs)
chr5 (153-193)||(30047501-30047541)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 40414715 - 40414514
Alignment:
Q  1 tctagagtgtaactcatttttgtatgttcataaggcatataaacaatcatttagcctcttccgcagatacaccaaagaagagttgtgaagtttatggtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40414715 tctagagtgtaactcatttttgtatgttcataaggcatataaacaatcatttagcctcttccgcagatacaccaaagaagagttgtgaagtttatggtaa 40414616  T
Q  101 gggtataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40414615 gggtataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttat 40414516  T
Q  201 at 202  Q
    ||    
T  40414515 at 40414514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 24412903 - 24412802
Alignment:
Q  101 gggtataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttat 200  Q
    ||||||||| |||| |||||||| |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  24412903 gggtataaaagtttgttacaagtaagttatgtaatctaactaagtttgttatgtttgtttagatagtttactaagcaagcaatgtgaataagcctcttat 24412804  T
Q  201 at 202  Q
    ||    
T  24412803 at 24412802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 24413022 - 24412925
Alignment:
Q  105 ataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttatat 202  Q
    ||||| |||| ||||||||||||||| ||||||| |||||||||||| ||||| |||||||| || ||||||||||||||| ||||||||||||||||    
T  24413022 ataaaagtttgttacaagttagttaggtaatctagctaagtttgttacgtttggttagatagtttgctaagcaagcaatgtgaataagcctcttatat 24412925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 26905348 - 26905398
Alignment:
Q  101 gggtataaaggtttattacaagttagttagttaatctaactaagtttgtta 151  Q
    ||||||||| |||| |||||||||||||||  |||||| ||||||||||||    
T  26905348 gggtataaaagtttgttacaagttagttagaaaatctagctaagtttgtta 26905398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 44912765 - 44912664
Alignment:
Q  101 gggtataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttat 200  Q
    ||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  44912765 gggtataaaagtttgttacaagttagttaggtaatctagctaagtttgttatgtttgtttagatagcttactaaacaagcgatgtaaataagcttcttat 44912666  T
Q  201 at 202  Q
    ||    
T  44912665 at 44912664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 44913748 - 44913647
Alignment:
Q  101 gggtataaaggtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttat 200  Q
    ||||||| | |||| ||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||    
T  44913748 gggtatagaagtttgttacaagttagttaggtaatctagctatatttgttatgtttgtttagatagcttactaagcaagcaatgtgaataagctttttat 44913649  T
Q  201 at 202  Q
    ||    
T  44913648 at 44913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 5437824 - 5437883
Alignment:
Q  143 agtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttatat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5437824 agtttgttatgtttgtttagatagcttactaagcaagcaatgtgaataagcctcttatat 5437883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 30642664 - 30642723
Alignment:
Q  143 agtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttatat 202  Q
    |||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  30642664 agttggttatgtttgtttagatagtttactatgcaagcaaggtaaataagcctcttatat 30642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 30647482 - 30647540
Alignment:
Q  143 agtttgttatgtttgtttagatagcttactaagcaagcaatgtaaataagcctcttatat 202  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  30647482 agttggttatgtttgtttagatagcttactaaccaagc-atgtaaataagcctcttatat 30647540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 22931834 - 22931763
Alignment:
Q  111 gtttattacaagttagttagttaatctaactaagtttgttatgtttgtttagatagcttactaagcaagcaa 182  Q
    |||| |||||||| ||| || | || || |||||||||||| |||||||||||| |||||||||||||||||    
T  22931834 gtttgttacaagtgagtcaggtgatgtagctaagtttgttaagtttgtttagattgcttactaagcaagcaa 22931763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 30047501 - 30047541
Alignment:
Q  153 gtttgtttagatagcttactaagcaagcaatgtaaataagc 193  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  30047501 gtttgttttgattgcttactaagcaagctatgtaaataagc 30047541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University