View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11909_high_6 (Length: 425)
Name: NF11909_high_6
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 408664 - 408271
Alignment:
| Q |
19 |
caaatttcccaaaatttgctggccctcttaatctgatcacacatctgtgaacactgcttcctaatttctaactactacacttagtgagtactttgcgaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
408664 |
caaatttcccaaaatttgctggccctcttaatctgatcacacatctgtgaacactgcttcctaatttctaactactacacttagtgagtactttgcgaaa |
408565 |
T |
|
| Q |
119 |
tccagctaaacagatttgaatcattgcaacaattccaaataaagctataatctgccaccaaaggctcaaagcaaacactacaacacctaacaactccttc |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
408564 |
tccagctaaacagatttgaaccattgcaacaattccaaataaagctataatctgccaccaaaggctcaaagcaaacactacaacacctaacaactccttc |
408465 |
T |
|
| Q |
219 |
caggagcaaacattaaacataacaaggagctatccgtaaaatgctttccagaaaccatttatatggagactatagaaataagattcataataataattac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
408464 |
caggagcaaacattaaacataacaaggagctatccgtaaaatgctttccagaaaccatttatatggagactatagaaataagattcataataataattac |
408365 |
T |
|
| Q |
319 |
aatcaatgaaaccctccacttcttctatcataaattaaaaccttcatttcttattgctcttccctttacctctttgcattctatcctcccttct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
408364 |
aatcaatgaaaccctccacttcttctatcataaattaaaaccttcatttcttattgctcttccctttacctctttgcattctatcctcccttct |
408271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University