View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_10 (Length: 383)
Name: NF11909_low_10
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 37810094 - 37810433
Alignment:
| Q |
18 |
aattgttctagacatcattgaccacaggaaacaaaggagcaccaacagctattgtatttcttattttgttnnnnnnnnnnnnctccaataaaagcaattg |
117 |
Q |
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| T |
37810094 |
aattgttctagacatcattgaccacaggaaacaaaggagcaccaacagctatggtatttcttattttgttcaaaaaaa----ctccactaaaagcaattg |
37810189 |
T |
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| Q |
118 |
cataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttga |
217 |
Q |
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| T |
37810190 |
cataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttga |
37810289 |
T |
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| Q |
218 |
cagcttggtcccaataatgaggaaccccagcatccacaaaaactttacgagcagctgcttcagtgatgcagtaatgaacactgaacctattgaagctcga |
317 |
Q |
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| T |
37810290 |
cagcttggtaccaataatgaagaaccccagcatccacaaaaactttacgagcagctgcttcagtgatgcagtcatgaacactgaacctattgaagctcga |
37810389 |
T |
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| Q |
318 |
tttggcaacatttccttgccacaccagaacacatttataggcat |
361 |
Q |
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| T |
37810390 |
tttggcaacacttccttgccacaccagaacacatttattggcat |
37810433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 52351954 - 52352287
Alignment:
| Q |
19 |
attgttctagacatcattgaccacaggaaacaaaggag--caccaacagctattgtatttcttattttgttnnnnnnnnnnnnctccaataaaagcaatt |
116 |
Q |
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| T |
52351954 |
attgttgtaggcatcattgaccacagcaaacaagggagagcaccaacagctatggcatttcttattttgttcaaaaaa-----ctccactagaagcaatt |
52352048 |
T |
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| Q |
117 |
gcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaaacattagaggacaattcaaacagcatcatcatctgtatagttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||| |||||||||||||||||| || || ||||||||| |
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| T |
52352049 |
gcataactgttaactcaccaaaagactggataggcatcctaattatgttaaccaaaaacactagaagacaattcaaacagcatcgtcctccgtatagttg |
52352148 |
T |
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| Q |
217 |
acagcttggtcccaataatgaggaaccccagcatccacaaaaactttacgagcagctgcttcagtgatgcagtaatgaacactgaacctattgaagctcg |
316 |
Q |
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| T |
52352149 |
acagcttggtcccaataatgaggaaccccagcatccacaaacactttacgagcagctgcttcagtgatgcagtcatgaacactgaacctattgaagctcg |
52352248 |
T |
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| Q |
317 |
atttggcaacatttccttgccacaccagaacacatttat |
355 |
Q |
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| T |
52352249 |
atttggcaacacttccttgccacaccagaacacatttat |
52352287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 17198600 - 17198673
Alignment:
| Q |
100 |
ctccaataaaagcaattgcataactgttaactcaccaaaagactggataggcatccaaataatgttgaccaaaa |
173 |
Q |
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||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17198600 |
ctccactagaagcaattgcatatctgttaactcaccaaaagactggataggcatcctaataatgttgaccaaaa |
17198673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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