View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_11 (Length: 383)
Name: NF11909_low_11
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 44450963 - 44450607
Alignment:
| Q |
11 |
cataggtgagactaaattcatgttattttctacattggagggataaattgatatcaactggaactaaattgttgtaacatttttagaaggccaaatttgt |
110 |
Q |
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| T |
44450963 |
cataggtgagactaaattcatgttattttctacatttgagggataaattgatatcaactggaactaaattgttgtaacatttttagaaggccaaatttgt |
44450864 |
T |
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| Q |
111 |
gccactttctgcgattgagggattaaactgttattaactttcttcagggtaccataatgaatgttaagtctgttctttttacctggagattattcattat |
210 |
Q |
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| T |
44450863 |
gccactttctgcgattgagggattaaactgttattaactttcttcagggtaccataatgaatgttaagtctgttctttttacctggagattattcattat |
44450764 |
T |
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| Q |
211 |
tttaaacaaagtcaaattcacagttctttaaaccaatgtattttcttaaagtaaatgcatttgagtatattactaatcaaatttcaagtatgtcagtgcg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44450763 |
tttaaacaaagtcaaattcacagttctttaaaccaatgtattttcttaaagtaaatgcatttgagtatattactaatcaaatttcaagtatgtcaatgcg |
44450664 |
T |
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| Q |
311 |
ccaaattcctaaacaattaccatgttttcatttcggtacgagggggaagcaacaaac |
367 |
Q |
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| T |
44450663 |
ccaaattcctaaacaattaccatgttttcattttggtacgagggggaagcaacaaac |
44450607 |
T |
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