View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_13 (Length: 370)
Name: NF11909_low_13
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 2699854 - 2699520
Alignment:
| Q |
19 |
atcacatcacaagaacatctcattagggaataacaaggtcgatactaacatttcacattgcataacattcatggaaggattagccagtacacagttcatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2699854 |
atcacatcacaagaacatctcattagggaataacaaggtcgacactaacatttcacattgcataacattcatggaaggattagccagtacacagttcatc |
2699755 |
T |
|
| Q |
119 |
atatcataatggtttacaccacttgttctaagttcttggaccttattctaataaattttaaaagtttatacacaccatttaacaaggaattagattgatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2699754 |
atatcataatggtttacaccacttgttctaagttcttggaccttattctaataaattttaaaagtttatacacaccatttaacaaggaattagattgatt |
2699655 |
T |
|
| Q |
219 |
cactcaattaattattttctcacactctcaagtcacgtttctctcaaaatacatcaaaaccgtgatctttgttcaagtcttgttctaatctctgtcttga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2699654 |
cactcaattaattattttctcacactctcaagtcacgtttctctcaaaatacatcaaaaccgtgatctttgttcaagtcttgttctaatctctgtcttga |
2699555 |
T |
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| Q |
319 |
taacgcaagtcttgggtcacacaaaatgcacatag |
353 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2699554 |
taacgcaagtcttgggtcacacaaaatgcacatag |
2699520 |
T |
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