View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11909_low_14 (Length: 367)

Name: NF11909_low_14
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11909_low_14
NF11909_low_14
[»] chr4 (20 HSPs)
chr4 (1-367)||(48891090-48891455)
chr4 (238-340)||(48852577-48852679)
chr4 (178-284)||(37827109-37827215)
chr4 (191-292)||(7237827-7237928)
chr4 (191-285)||(48898586-48898680)
chr4 (195-274)||(7773951-7774030)
chr4 (183-274)||(45372194-45372285)
chr4 (232-284)||(48875754-48875806)
chr4 (317-367)||(48170600-48170653)
chr4 (230-284)||(7877632-7877686)
chr4 (67-109)||(45385074-45385116)
chr4 (195-289)||(48170690-48170784)
chr4 (2-40)||(48170944-48170982)
chr4 (232-274)||(48870450-48870492)
chr4 (232-274)||(48886136-48886178)
chr4 (238-284)||(49044311-49044357)
chr4 (225-274)||(48863130-48863179)
chr4 (3-123)||(48852343-48852462)
chr4 (232-292)||(50250897-50250957)
chr4 (238-274)||(50672412-50672448)
[»] chr6 (2 HSPs)
chr6 (191-340)||(21015673-21015822)
chr6 (232-292)||(21979757-21979817)
[»] chr3 (6 HSPs)
chr3 (91-274)||(47452032-47452221)
chr3 (225-274)||(11015644-11015693)
chr3 (57-125)||(11006236-11006304)
chr3 (229-274)||(11006081-11006126)
chr3 (297-364)||(11015557-11015627)
chr3 (297-364)||(11024569-11024639)
[»] chr8 (2 HSPs)
chr8 (226-366)||(12200206-12200349)
chr8 (226-366)||(12444634-12444777)
[»] chr7 (1 HSPs)
chr7 (176-284)||(48883650-48883758)
[»] chr5 (2 HSPs)
chr5 (183-291)||(42562439-42562547)
chr5 (238-291)||(29712574-29712627)
[»] chr1 (1 HSPs)
chr1 (225-274)||(24310084-24310133)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 48891090 - 48891455
Alignment:
Q  1 agatcctcattttgcaaattcgcattttcaacttaccgcccccaacacacacactcagaattctgctcatatcaacttcagctcctaaaattcgatctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  48891090 agatcctcattttgcaaattcgcattttcaacttaccgcccccaacacacac--tcagaattctgctcatatcaacttcagctcctaaaattcgatctat 48891187  T
Q  101 agatttagaagt-atcgcttaacgattttagtgcttctgcttcattgaacatcaatttcttgcatccccaatcttattttcatattaaagcttcatgtag 199  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48891188 agatttagaagttatcgcttaacgattttagtgcttctgcttcactgaacatcaatttcttgcatccccaatcttattttcatattaaagcttcatgtag 48891287  T
Q  200 agggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggtta 299  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  48891288 agggtttgtacttttgcatactaactcaaacatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattcgaggtta 48891387  T
Q  300 gatgccaactatttatattatctatatggttttaggtatgagttaagagatgattacttggtggtttc 367  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48891388 gatgccaactatttatgttatctatatggttttaggtatgagttaagagatgattagttggtggtttc 48891455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 238 - 340
Target Start/End: Original strand, 48852577 - 48852679
Alignment:
Q  238 tatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctatatggttttaggta 337  Q
    |||||||||||||||| ||| ||||||||||||||||  ||||||| ||||||||||||||||||| ||  ||||| | |||||||||||||||| ||||    
T  48852577 tatggaatccatccaccggagttcacaaacaaatacctttgtctcccattgattcgaggttagatggcacatatttctgttatctatatggttttgggta 48852676  T
Q  338 tga 340  Q
    |||    
T  48852677 tga 48852679  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 37827215 - 37827109
Alignment:
Q  178 ttcatattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaat 277  Q
    |||| ||||||| |||| |||||||||||||| |||||||   |   | |||||||||| |||||||||||||||||||| ||||||||||||||||  |    
T  37827215 ttcaaattaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaataccctt 37827116  T
Q  278 gtctcct 284  Q
    |||||||    
T  37827115 gtctcct 37827109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 7237928 - 7237827
Alignment:
Q  191 ttcatgtagagggtttgtacttttgcatactaact--caaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattg 288  Q
    |||||||||||||||| ||||||||  ||| |||   |||||||||||||||||||||||||||||||| || | |||||||||||  |||||||| |||    
T  7237928 ttcatgtagagggtttatacttttg--taccaacctccaaacatctacgtatggaatccatccactggatttaaaaaacaaatacccgtgtctccttttg 7237831  T
Q  289 attc 292  Q
    ||||    
T  7237830 attc 7237827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 48898586 - 48898680
Alignment:
Q  191 ttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctccta 285  Q
    |||||||||||| ||| ||||||||||||||  |||| | ||| || |||||||||||||||| |||  |||||||||||||||  |||||||||    
T  48898586 ttcatgtagaggctttatacttttgcatacttgctcagatatccacctatggaatccatccaccggagctcacaaacaaatacctttgtctccta 48898680  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 7774030 - 7773951
Alignment:
Q  195 tgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    |||||||||||| |||||||| ||  | || ||||||||||| |||||||||||||||||||| || | |||||||||||    
T  7774030 tgtagagggtttatacttttgtatcgtgacccaaacatctacatatggaatccatccactggatttaaaaaacaaatacc 7773951  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 45372285 - 45372194
Alignment:
Q  183 attaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    ||||||| |||||||||||||||| || ||||||||  ||| |||| | ||||  |||||||||||||||||||  |||| |||||||||||    
T  45372285 attaaaggttcatgtagagggtttatatttttgcatggtaattcaaccttctatctatggaatccatccactggtgttcagaaacaaatacc 45372194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 48875754 - 48875806
Alignment:
Q  232 tctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcct 284  Q
    ||||| |||||||||||||||| ||| |||||||||||||||| |||||||||    
T  48875754 tctacctatggaatccatccaccggatttcacaaacaaatacctatgtctcct 48875806  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 48170653 - 48170600
Alignment:
Q  317 ttatctatatggttttaggtatga---gttaagagatgattacttggtggtttc 367  Q
    |||||||||||||||| |||||||   |||||||||||||||||| ||||||||    
T  48170653 ttatctatatggttttgggtatgatcagttaagagatgattacttagtggtttc 48170600  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 7877632 - 7877686
Alignment:
Q  230 catctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcct 284  Q
    ||||||| |||||||||||||||||||| || | |||||||||||  ||||||||    
T  7877632 catctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctcct 7877686  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 45385116 - 45385074
Alignment:
Q  67 tcatatcaacttcagctcctaaaattcgatctatagatttaga 109  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  45385116 tcatatcaacttcagctcgtaaatctcgatctatagatttaga 45385074  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 48170784 - 48170690
Alignment:
Q  195 tgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattga 289  Q
    |||||||| ||| || ||||||||  ||| ||||   ||||| ||||||||||||||||  || |||| |||||||||||  |||||||||||||    
T  48170784 tgtagaggctttatatttttgcatcataattcaagtttctacctatggaatccatccacccgagttcataaacaaatacctttgtctcctattga 48170690  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 48170982 - 48170944
Alignment:
Q  2 gatcctcattttgcaaattcgcattttcaacttaccgcc 40  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  48170982 gatcctcactttgcaaattcgcattttcaaattaccgcc 48170944  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 48870450 - 48870492
Alignment:
Q  232 tctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  48870450 tctacctatggaatccatccaccggatttcacaaacaaatacc 48870492  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 48886136 - 48886178
Alignment:
Q  232 tctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  48886136 tctacctatggaatccatccaccggatttcacaaacaaatacc 48886178  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 49044357 - 49044311
Alignment:
Q  238 tatggaatccatccactggacttcacaaacaaataccaatgtctcct 284  Q
    ||||||||||||||||| || ||||||||||||||||  ||||||||    
T  49044357 tatggaatccatccactagagttcacaaacaaatacctttgtctcct 49044311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 48863130 - 48863179
Alignment:
Q  225 tcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    |||||||||||| |||||||||||||||| |||  ||| |||||||||||    
T  48863130 tcaaacatctacctatggaatccatccaccggagctcagaaacaaatacc 48863179  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 48852343 - 48852462
Alignment:
Q  3 atcctcattttgcaaattcgcattttcaacttaccgcccccaacacacacactcagaattctgctcatatcaacttcagctcctaaaattcgatctatag 102  Q
    ||||||| |||||||||||||||||| || |||| | || |||||||||| |  ||||||||  || | ||||||||||  | | ||| || ||||||||    
T  48852343 atcctcactttgcaaattcgcattttgaaattactg-cctcaacacacactcgtagaattctattcgtctcaacttcagaacttcaaactctatctatag 48852441  T
Q  103 atttagaagtatcgcttaacg 123  Q
    || | |||| |||||||||||    
T  48852442 atctcgaagcatcgcttaacg 48852462  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 50250957 - 50250897
Alignment:
Q  232 tctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattc 292  Q
    ||||| |||||||||||||||| || ||||||| |||||||||  |||||| | |||||||    
T  50250957 tctacctatggaatccatccaccgggcttcacatacaaatacctttgtctcattttgattc 50250897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 50672412 - 50672448
Alignment:
Q  238 tatggaatccatccactggacttcacaaacaaatacc 274  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaatacc 50672448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 21015673 - 21015822
Alignment:
Q  191 ttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgat 290  Q
    |||||||||||||||| || |||||||   | | |||||||||||| ||||||||||||||||| || ||||||||||||||||  ||||||||| |  |    
T  21015673 ttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagt 21015772  T
Q  291 tcgaggttagatgccaactatttatattatctatatggttttaggtatga 340  Q
    ||    |||| || ||| ||| ||| |||||||||||||||| |||||||    
T  21015773 tcatatttaggtgtcaattatatatgttatctatatggttttgggtatga 21015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 21979817 - 21979757
Alignment:
Q  232 tctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattc 292  Q
    ||||| ||||||| || || ||||||||||| |||||||||||  |||||||| |||||||    
T  21979817 tctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattc 21979757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 91 - 274
Target Start/End: Complemental strand, 47452221 - 47452032
Alignment:
Q  91 ttcgatctatagatttagaagtatcgcttaacgattttagtgcttctgcttcattgaacatcaatttcttgcatccccaatcttattttcat------at 184  Q
    ||||||| |||||||||||||  || ||||| |||  |||||||||| |||||  |||| | ||||| |||| |||||||||| | | | ||      ||    
T  47452221 ttcgatcaatagatttagaagcgtcacttaatgatgatagtgcttctacttcaccgaaccttaattttttgcttccccaatctgagtataatcttgaaat 47452122  T
Q  185 taaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    ||||| |||||||||||||||| |||||||   |  |   |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  47452121 taaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacc 47452032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 11015693 - 11015644
Alignment:
Q  225 tcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  11015693 tcaaacatctacctatggaatccatcaactggacatcacaaacaaatacc 11015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 11006304 - 11006236
Alignment:
Q  57 agaattctgctcatatcaacttcagctcctaaaattcgatctatagatttagaagtatcgcttaacgat 125  Q
    |||||| || |||| |||||| |||||| | |||||||||| |||||||| |||| |||||||||||||    
T  11006304 agaattgtgttcatgtcaactccagctcttgaaattcgatccatagattttgaagcatcgcttaacgat 11006236  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 11006126 - 11006081
Alignment:
Q  229 acatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    |||||||| ||||||||||||||||||||| || || |||||||||    
T  11006126 acatctacctatggaatccatccactggacgtctcagacaaatacc 11006081  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 11015627 - 11015557
Alignment:
Q  297 ttagatgccaactatttatattatctatatggttttaggtatgag---ttaagagatgattacttggtggt 364  Q
    ||||||||||| |||| || || ||| ||||||||| |||||||    |||||||||||||||||||||||    
T  11015627 ttagatgccaaatattcatgttgtctgtatggttttgggtatgaccatttaagagatgattacttggtggt 11015557  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 11024639 - 11024569
Alignment:
Q  297 ttagatgccaactatttatattatctatatggttttaggtatgag---ttaagagatgattacttggtggt 364  Q
    ||||||||||| |||| || || ||||||||||||| |||||||    | |||||||||||||||||||||    
T  11024639 ttagatgccaaatattcatgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggt 11024569  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 366
Target Start/End: Original strand, 12200206 - 12200349
Alignment:
Q  226 caaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctata 325  Q
    |||| ||||||||||||||||||||| || |  |||||||| |||||||  |||||||| |||||| || |||| ||||  || ||  | || |||||||    
T  12200206 caaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctata 12200305  T
Q  326 tggttttaggtatga---gttaagagatgattacttggtggttt 366  Q
    ||||||| | |||||   || |||||||||||||||||||||||    
T  12200306 tggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 226 - 366
Target Start/End: Original strand, 12444634 - 12444777
Alignment:
Q  226 caaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctcctattgattcgaggttagatgccaactatttatattatctata 325  Q
    |||| ||||||||||||||||||||| || |  |||||||| |||||||  |||||||| |||||| || |||| ||||  || ||  | || |||||||    
T  12444634 caaatatctacgtatggaatccatcctctaggtttcacaaaaaaatacctttgtctccttttgatttgaagttacatgcataccatcgacatcatctata 12444733  T
Q  326 tggttttaggtatga---gttaagagatgattacttggtggttt 366  Q
    ||||||| | |||||   || |||||||||||||||||||||||    
T  12444734 tggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 48883650 - 48883758
Alignment:
Q  176 ttttcatattaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaatacca 275  Q
    |||||| ||||||| ||| |||||||||||| |  ||||||||  |   || ||||||| | |||||||||||| ||||||| ||||||||||||||||     
T  48883650 ttttcaaattaaaggttcgtgtagagggtttctgtttttgcatggttcttccaacatctgcatatggaatccatacactggatttcacaaacaaatacct 48883749  T
Q  276 atgtctcct 284  Q
     ||||||||    
T  48883750 ttgtctcct 48883758  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 42562547 - 42562439
Alignment:
Q  183 attaaagcttcatgtagagggtttgtacttttgcatactaactcaaacatctacgtatggaatccatccactggacttcacaaacaaataccaatgtctc 282  Q
    ||||||| ||| |||||||||||| |||||||||||  |    ||  | ||||| |||||||||||||||  |||| |||||||||||||||  ||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatccatcggacatcacaaacaaatacctttgtctc 42562448  T
Q  283 ctattgatt 291  Q
    |||||||||    
T  42562447 ctattgatt 42562439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 29712627 - 29712574
Alignment:
Q  238 tatggaatccatccactggacttcacaaacaaataccaatgtctcctattgatt 291  Q
    |||||||||||||||||||| |||||||| | |||||||  |||| ||||||||    
T  29712627 tatggaatccatccactggagttcacaaatatataccaaattctcttattgatt 29712574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 24310084 - 24310133
Alignment:
Q  225 tcaaacatctacgtatggaatccatccactggacttcacaaacaaatacc 274  Q
    |||||||| |||||||||||||||||||| ||| |||| | |||||||||    
T  24310084 tcaaacatttacgtatggaatccatccaccggagttcatagacaaatacc 24310133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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