View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_19 (Length: 285)
Name: NF11909_low_19
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 50047803 - 50047533
Alignment:
| Q |
1 |
cacaggctgcgtgtatttttggttggctttccatcacaaatcacccggaaacacgtggattgggaagcaggtagaggattttaagcataggagtgtcgga |
100 |
Q |
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| T |
50047803 |
cacaggctgcgtgtatttttggttggctttccatcacaaatcacccggaaacacgtggattgggaagcaggtagaggattttaagcataggagtgtcgga |
50047704 |
T |
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| Q |
101 |
tcgggttacacttactccatgtattggtctattgtaacccttaccactgttggctatggagatttacatgcagaaaatacaacggagaaggttttcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50047703 |
tcgggttacacttactccatgtattggtctattgtaacccttaccactgttggctatggagatttacatgcagaaaatacaacggagaaggttttcaata |
50047604 |
T |
|
| Q |
201 |
ttttttatatgctgtttaacatcggactcactgcatatattatcggaaacatgacaaatctggtggttcat |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50047603 |
ttttttatatgctgtttaacatcggactcactgcatatattatcggaaacatgacaaatctggtggttcat |
50047533 |
T |
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