View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_2 (Length: 640)
Name: NF11909_low_2
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 217 - 455
Target Start/End: Complemental strand, 14042657 - 14042419
Alignment:
| Q |
217 |
tttagaaagtaaacttcagatgatggaagaccaatacaatagagaaattggttaataagtcttccttttattggtaggagaagatgatgtatcatcaaac |
316 |
Q |
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| T |
14042657 |
tttagaaagtaaacttcagatgatggaagaccgatacaatagagaaattggttaataagtcttccttttattggtaggagaagatgatgtatcatcaaac |
14042558 |
T |
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| Q |
317 |
taaatctacaagccttcgatgttcccaccttgtttatgcactctttttctctcataggctctccatctctctccccctctatctaaatttgcgtattgaa |
416 |
Q |
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| T |
14042557 |
taaatctacaagccttctacattcccaccttgtttatgcactctttttctctcataggctctccatctctctccccctctatctaaatttgcgtattgaa |
14042458 |
T |
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| Q |
417 |
tggatgaatcaatgatgatgcaagcatctatttatagat |
455 |
Q |
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| T |
14042457 |
tggatgaatcaatgatgatgcaagcatctatttatagat |
14042419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 14042827 - 14042651
Alignment:
| Q |
19 |
aactattgggataccatcattcagaatggatcagcttcttaaaaggcaaagatattgaattttatatgctgattgttacattgggttttctcaataattt |
118 |
Q |
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| T |
14042827 |
aactattgggataccatcattgagaatggatcagcttcttaaaaggcaaagatattgaattttatatgctgattgttacattgggttttctcaataattt |
14042728 |
T |
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| Q |
119 |
caacctttgttcacaaaaataaagattggtttgaatctcttgaaatgcagaagttgtttttatttgttgttttagaa |
195 |
Q |
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| T |
14042727 |
caacctttgttcacataaataaagattggtttgaatctcttgaaatgcagaagttgtttttatttgttgttttagaa |
14042651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 454 - 616
Target Start/End: Complemental strand, 14042388 - 14042226
Alignment:
| Q |
454 |
atggttctttataggcgaacaaatgttacttcgccaatagatttttgccagctcagccacatgtgggagataaaacgcaatcaatcacgaagcgagttgt |
553 |
Q |
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| T |
14042388 |
atggttctttataggcgaacaaatgttacttcgccaatagatttttgccagctcagccacatgtgggagataaaacgcaatcaatcacgaagcgagttgt |
14042289 |
T |
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| Q |
554 |
tttctttgcaggctgatattctcctatttcagaacacgagcttctgaattgaaactcgccgtg |
616 |
Q |
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| T |
14042288 |
tttctttgtaggccgatattctcctatttcagaacacgagcttctgaattgaaactcgccgtg |
14042226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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