View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_20 (Length: 264)
Name: NF11909_low_20
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 23850227 - 23849983
Alignment:
| Q |
1 |
atgatgatgatgatggtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagt |
100 |
Q |
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| T |
23850227 |
atgatgatgatgatggtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagt |
23850128 |
T |
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| Q |
101 |
gttgttgctgaagaagagttggaggcatgcttactttaaattcattggttttaaagaaaatgtaacaaaataggttaaagaaaatatgtacgggaagccc |
200 |
Q |
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| T |
23850127 |
gttgttgctgaagaagagttggaggcatgcttactttaaattcattggttttaaagaaaatgtaacaaaataggttaaagaaaatatgtacgggaagccc |
23850028 |
T |
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| Q |
201 |
tgttgatttgtgaaacatgattgtctttatcttggtttttggatt |
245 |
Q |
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| T |
23850027 |
tgttgatttgtgaaacatgattgtctttatcttggtttttggatt |
23849983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 23749523 - 23749377
Alignment:
| Q |
1 |
atgatgatgatgatggtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||| || || ||||||| |
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| T |
23749523 |
atgatgatggtgatggtaaacaaaataggagtgagaaattgtggttttactttgtggtagcacttggatttgctactggcttttgggtttttattggagt |
23749424 |
T |
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| Q |
101 |
gttgttgctgaagaagagttggaggcatgcttactttaaattcattg |
147 |
Q |
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| T |
23749423 |
tttcttgttgaagaagggttggaggtttgcttacttcaaattcattg |
23749377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 22616923 - 22616782
Alignment:
| Q |
6 |
gatgatgatggtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgttgt |
105 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||| |||||||||||| |||||||||| | |||||||||| || || ||||||| || | |
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| T |
22616923 |
gatgatgatggtaaacatgatagggctgagaaactgtggttttattttgttgtagcaattggatttgctactggcttttgggtttttattggagttttct |
22616824 |
T |
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| Q |
106 |
tgctgaagaagagttggaggcatgcttactttaaattcattg |
147 |
Q |
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| T |
22616823 |
tgttgaagaagggtcggagggatgcttactttaatttcattg |
22616782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 20574426 - 20574570
Alignment:
| Q |
3 |
gatgatgatgatggtaaacaaaataggagtgagaagttgtggttttactttgttgtagcacttggatttgccagtggcttttggcttgttgttggagtgt |
102 |
Q |
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|||||||||||| ||||||| |||| | |||||| ||||||||||||||||| |||| |||||| ||||| | ||| |||||| | || ||||||| | |
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| T |
20574426 |
gatgatgatgatagtaaacatgatagaactgagaaattgtggttttactttgtggtagtacttgggtttgctactgggttttgggtctttattggagttt |
20574525 |
T |
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| Q |
103 |
tgttgctgaagaagagttggaggcatgcttactttaaattcattg |
147 |
Q |
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| ||| |||||||| || | ||||||||||||||||||||||||| |
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| T |
20574526 |
tcttgttgaagaagggtcgaaggcatgcttactttaaattcattg |
20574570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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