View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_23 (Length: 258)
Name: NF11909_low_23
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 43064249 - 43064357
Alignment:
| Q |
17 |
acaagactgaatgatgtcgagagagacaagtgagaatggaatttctattgaatcaat-ggatgttcagagttgaaaagttgaaacgatggagtgatattg |
115 |
Q |
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| T |
43064249 |
acaagagtgaatgatgtcgagagagacaagtgagaatggaatttctattgaatcaatgggatgttcagagttgaaaagttgaaacgatggagt-atattg |
43064347 |
T |
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| Q |
116 |
aattaaaatg |
125 |
Q |
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|||||||||| |
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| T |
43064348 |
aattaaaatg |
43064357 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 43064363 - 43064433
Alignment:
| Q |
165 |
aaatgagattattatgtgagatgagcatcattttaattaattaaagaaacacaacattggtgtggcctacc |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43064363 |
aaatgagattattatgtgagatgagcatcattttaattaattaaagaaacacaacattggtgtggcctacc |
43064433 |
T |
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