View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_25 (Length: 241)
Name: NF11909_low_25
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_25 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4027922 - 4028162
Alignment:
| Q |
1 |
aaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatgaatgtcattgacc |
100 |
Q |
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| T |
4027922 |
aaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatgaatgtcattgacc |
4028021 |
T |
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| Q |
101 |
ttgcagtttaaagtgtgaactaatacacattcacactcccacagagcattagatctgtatattattnnnnnnntattaatgtcaccattatttaaatata |
200 |
Q |
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| T |
4028022 |
ttgcagtttaaagtgtgaactaatacacattcacactcccacagagcattagatctgtatattattaaaaaaatattaatgtcaccattatttaaatata |
4028121 |
T |
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| Q |
201 |
aaatagcaggggcaaacgttgagttgcttaacaatttacat |
241 |
Q |
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| T |
4028122 |
aaatagcaggggcaaacgttgagttgcttaacaatttacat |
4028162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 3950935 - 3950879
Alignment:
| Q |
22 |
aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttc |
78 |
Q |
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| T |
3950935 |
aagaaagcaatttctgaccttcaatgttttggctgctagagatctgattcaactttc |
3950879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4215914 - 4216055
Alignment:
| Q |
1 |
aaaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatgt |
92 |
Q |
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| T |
4215914 |
aaaagtaatggtgatagccataagaaagctataacggaacttcaatgctttggccgctagagatctgattcaactttctatcatatggaagaagcaatgt |
4216013 |
T |
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| Q |
93 |
cattgaccttgcagtttaaagtgtgaactaatacacattcac |
134 |
Q |
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| T |
4216014 |
cattgaccttgcatttaaaagtgtgaactcgtacacattcac |
4216055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 3796811 - 3796931
Alignment:
| Q |
22 |
aagaaagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatatg--------aatgtcattgaccttgcagtttaaag |
113 |
Q |
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| T |
3796811 |
aagaaagctataacggaacttcaatgctttggccgctagtgatctgattcaactttctatcatatggaagaagcaatgtcattgaccttgcatttaaaag |
3796910 |
T |
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| Q |
114 |
tgtgaactaatacacattcac |
134 |
Q |
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| T |
3796911 |
tgtgaactcatacacattcac |
3796931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 3961159 - 3961099
Alignment:
| Q |
26 |
aagcaattactgaccttgaatgctttggctgctagagatctgattcgactttcactcatat |
86 |
Q |
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| T |
3961159 |
aagcaattactaaccttcaatgatttggctgctagagatctgtttcaactttctctcatat |
3961099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 4221238 - 4221283
Alignment:
| Q |
26 |
aagcaattactgaccttgaatgctttggctgctagagatctgattc |
71 |
Q |
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| T |
4221238 |
aagcaattactgaccttaaatgctttgtttgctagagatctgattc |
4221283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 3822703 - 3822750
Alignment:
| Q |
24 |
gaaagcaattactgaccttgaatgctttggctgctagagatctgattc |
71 |
Q |
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| T |
3822703 |
gaaagaaattactgaccttaaatgctttgtttgctagagatctgattc |
3822750 |
T |
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