View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11909_low_4 (Length: 447)

Name: NF11909_low_4
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11909_low_4
NF11909_low_4
[»] chr4 (5 HSPs)
chr4 (20-428)||(2884331-2884739)
chr4 (253-428)||(2899821-2899996)
chr4 (18-187)||(2900466-2900635)
chr4 (18-176)||(2874335-2874493)
chr4 (272-363)||(2874715-2874806)
[»] chr2 (6 HSPs)
chr2 (20-170)||(44225341-44225491)
chr2 (20-170)||(44236155-44236305)
chr2 (20-170)||(44213180-44213330)
chr2 (275-388)||(44225231-44225344)
chr2 (275-388)||(44236045-44236158)
chr2 (287-381)||(44213077-44213171)
[»] chr8 (1 HSPs)
chr8 (32-114)||(4498067-4498149)
[»] chr7 (7 HSPs)
chr7 (18-144)||(39550630-39550756)
chr7 (18-135)||(39577239-39577356)
chr7 (32-144)||(39541372-39541484)
chr7 (18-132)||(39360866-39360980)
chr7 (18-144)||(39567423-39567549)
chr7 (43-132)||(39335082-39335171)
chr7 (18-91)||(42135603-42135676)


Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 2884331 - 2884739
Alignment:
Q  20 gagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884331 gagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttg 2884430  T
Q  120 gtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaagtcaaagtttatatcttgagtccattctttcaagtttttggtgaacact 219  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884431 gtttcaaatgtcctgagaggaaaggtgcagcggactttcttcaagaagtaagtcaaagtttatatcttgagtccattctttcaagtttttggtgaacact 2884530  T
Q  220 atatgaagatatataagtttatcgaaacatgaccttaatctattttttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884531 atatgaagatatataagtttatcgaaacatgaccttaatctatttcttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaa 2884630  T
Q  320 aaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgaca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884631 aaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgaca 2884730  T
Q  420 agtctaaga 428  Q
    |||||||||    
T  2884731 agtctaaga 2884739  T

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Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 253 - 428
Target Start/End: Complemental strand, 2899996 - 2899821
Alignment:
Q  253 cttaatctattttttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaattt 352  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2899996 cttaatctatttctccttgcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttttaactgttactcaattt 2899897  T
Q  353 gctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaaga 428  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2899896 gctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaagtctaaga 2899821  T

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Target: chr4; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 2900635 - 2900466
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagt 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||| ||||||| ||||||||||||||    
T  2900635 cagagacttatgaactttttgatgacattattcttatatccgatggtcaaattgtctatcaaggaccgcgtgaacatgttcttgacttttttgaatcagt 2900536  T
Q  118 tggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaagtcaaagtttatatctt 187  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  2900535 tggtttcaaatgtcctgagaggaaaggggtagctgactttcttcaagaagtaagtcaaagtttatatctt 2900466  T

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Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 2874335 - 2874493
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagt 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||| || |||||||||||||||||||  |    
T  2874335 cagagacttatgaactttttgatgacattattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgttcttgaattttttgaatctat 2874434  T
Q  118 tggtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaagtcaaa 176  Q
    ||||||||||||||||||||||||||| |  ||||| || |||||||||||||||||||    
T  2874435 tggtttcaaatgtcctgagaggaaaggcgttgctgatttccttcaagaagtaagtcaaa 2874493  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 2874715 - 2874806
Alignment:
Q  272 caggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatt 363  Q
    |||||||||||||  |||||||||||||| |||||| |  |||||||  ||||||| ||||||||||| |||||||||||||| ||||||||    
T  2874715 caggtaacttcaagaaaggatcaagagcaatattggatgcacagagatgaaccatataggtttgtaacagttactcaatttgcagaggcatt 2874806  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 44225491 - 44225341
Alignment:
Q  20 gagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttg 119  Q
    ||||||||||| |||||||||||||||||  | || |||||||| ||| |||| ||||| || || |||||| || ||||||| ||||||||| || | |    
T  44225491 gagacttatgatctttttgatgacattatcttaatttctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttgaaacaatgg 44225392  T
Q  120 gtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaa 170  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  44225391 gtttcaaatgtcctgaaaggaaaggtgctgctgactttcttcaagaagtaa 44225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 44236305 - 44236155
Alignment:
Q  20 gagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttg 119  Q
    ||||||||||| |||||||||||||||||  | || |||||||| ||| |||| ||||| || || |||||| || ||||||| ||||||||| || | |    
T  44236305 gagacttatgatctttttgatgacattatcttaatctctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttgaaacaatgg 44236206  T
Q  120 gtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaa 170  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  44236205 gtttcaaatgtcctgaaaggaaaggtgccgctgactttcttcaagaagtaa 44236155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 44213330 - 44213180
Alignment:
Q  20 gagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttg 119  Q
    ||||||||||| |||||||||||||||||  | ||||||||||| ||| |||| ||||| || || |||||| || ||||||| ||||| |||||  | |    
T  44213330 gagacttatgatctttttgatgacattatcttaatatctgatggccaagttgtataccatggcccccgcgaatatgttcttgactttttcgaatctatgg 44213231  T
Q  120 gtttcaaatgtcctgagaggaaaggtgcagctgactttcttcaagaagtaa 170  Q
    |||||||||||||||| ||||||||||  ||||| ||||||||||||||||    
T  44213230 gtttcaaatgtcctgaaaggaaaggtgttgctgattttcttcaagaagtaa 44213180  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 388
Target Start/End: Complemental strand, 44225344 - 44225231
Alignment:
Q  275 gtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcatacc 374  Q
    |||||||| || ||||||||||  ||||| |||||   ||||||  |||||||||| |||||||||||||||||||| |||||||| |||||||| | ||    
T  44225344 gtaacttccaaaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttcc 44225245  T
Q  375 atgttggaaggaaa 388  Q
    || |||| ||||||    
T  44225244 atattggtaggaaa 44225231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 388
Target Start/End: Complemental strand, 44236158 - 44236045
Alignment:
Q  275 gtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcatacc 374  Q
    |||||||| || ||||||||||  ||||| |||||   ||||||  |||||||||| |||||||||||||||||||| |||||||| |||||||| | ||    
T  44236158 gtaacttccaaaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttcc 44236059  T
Q  375 atgttggaaggaaa 388  Q
    || |||| ||||||    
T  44236058 atattggtaggaaa 44236045  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 44213171 - 44213077
Alignment:
Q  287 aaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttgg 381  Q
    ||||||||||  ||||| |||||   ||||||  |||||||| | | ||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  44213171 aaggatcaagcacagtactgggtgcgcagagatcaaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattgg 44213077  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 4498067 - 4498149
Alignment:
Q  32 ctttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatc 114  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||| || || ||||| ||| ||||||| ||||||||    
T  4498067 ctttttgatgacattattcttatatctgagggtcaagttgtgtaccaaggtccacgtgaacacattgttgaattctttgaatc 4498149  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 39550756 - 39550630
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagt 117  Q
    ||||||||||  | |||||||| |||||||||||  | |||||| |||| ||| | |||||||| || || || ||  | ||||||||||| |||||| |    
T  39550756 cagagacttacaatctttttgacgacattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaat 39550657  T
Q  118 tggtttcaaatgtcctgagaggaaagg 144  Q
    |||||| ||||||||||| ||||||||    
T  39550656 tggttttaaatgtcctgataggaaagg 39550630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 39577356 - 39577239
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagt 117  Q
    ||||||||||||| |||||||| |||||||||||  | ||||| || || ||||| ||||| || ||| | |||||  | |||||||||||||  ||| |    
T  39577356 cagagacttatgatctttttgacgacattattctactctctgaggggcacattgtgtaccagggtccttgtgaacacgtgcttgaattttttgcttcatt 39577257  T
Q  118 tggtttcaaatgtcctga 135  Q
     |||||||| ||||||||    
T  39577256 aggtttcaagtgtcctga 39577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 39541484 - 39541372
Alignment:
Q  32 ctttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtc 131  Q
    ||||||||||| ||||||||  | |||||| |||| ||| | |||||||| || || || ||  | ||||||||||| |||||| | ||||| |||||||    
T  39541484 ctttttgatgaaattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaatcggttttaaatgtc 39541385  T
Q  132 ctgagaggaaagg 144  Q
    |||| ||||||||    
T  39541384 ctgataggaaagg 39541372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 39360866 - 39360980
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagt 117  Q
    ||||||||||  | |||||||| |||||||| ||  | |||||| |||| ||| | |||||||| || || |||||  | ||||||||||| |||||| |    
T  39360866 cagagacttacaatctttttgacgacattatactactctctgatagtcacattatttaccaaggtccccgggaacacgtgcttgaatttttcgaatcaat 39360965  T
Q  118 tggtttcaaatgtcc 132  Q
    |||||| ||||||||    
T  39360966 tggttttaaatgtcc 39360980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 39567549 - 39567423
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagt 117  Q
    ||||||||||  | |||||||| ||| |||||||  | |||||| |||  ||| | |||||||| || || |||||  | |||||||||||||||||| |    
T  39567549 cagagacttacaatctttttgacgacgttattctactctctgatagtcgcattatataccaaggtccccgggaacacgtacttgaattttttgaatcaat 39567450  T
Q  118 tggtttcaaatgtcctgagaggaaagg 144  Q
     ||||| |||||||| || ||||||||    
T  39567449 cggttttaaatgtccagataggaaagg 39567423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 39335082 - 39335171
Alignment:
Q  43 cattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcc 132  Q
    |||||||||  | |||||| |||| ||| | |||||||| ||||| |||||  | ||||||||||| |||||| ||||||| ||||||||    
T  39335082 cattattctactctctgatagtcatattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtcc 39335171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 42135676 - 42135603
Alignment:
Q  18 cagagacttatgaactttttgatgacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaa 91  Q
    ||||||| | |||||| |||||||||||||| ||  | || || ||||||||||| ||||||||||| ||||||    
T  42135676 cagagacatttgaactctttgatgacattatcctactttcagaaggtcaaattgtataccaaggaccacgcgaa 42135603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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