View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11909_low_7 (Length: 422)

Name: NF11909_low_7
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11909_low_7
NF11909_low_7
[»] chr4 (5 HSPs)
chr4 (16-403)||(2884352-2884739)
chr4 (228-403)||(2899821-2899996)
chr4 (16-162)||(2900466-2900612)
chr4 (16-151)||(2874358-2874493)
chr4 (247-338)||(2874715-2874806)
[»] chr2 (6 HSPs)
chr2 (31-145)||(44225341-44225455)
chr2 (31-145)||(44236155-44236269)
chr2 (28-145)||(44213180-44213297)
chr2 (250-363)||(44225231-44225344)
chr2 (250-363)||(44236045-44236158)
chr2 (262-356)||(44213077-44213171)
[»] chr8 (1 HSPs)
chr8 (16-89)||(4498076-4498149)
[»] chr7 (2 HSPs)
chr7 (16-119)||(39550630-39550733)
chr7 (18-107)||(39335082-39335171)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 2884352 - 2884739
Alignment:
Q  16 gacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagagga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884352 gacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagagga 2884451  T
Q  116 aaggtgcagctgactttcttcaagaagtaagtcaaagtttatatcttgagtccattctttcaagtttttggtgaacactatatgaagatatataagttta 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884452 aaggtgcagcggactttcttcaagaagtaagtcaaagtttatatcttgagtccattctttcaagtttttggtgaacactatatgaagatatataagttta 2884551  T
Q  216 tcgaaacatgaccttaatctattttttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaact 315  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884552 tcgaaacatgaccttaatctatttcttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaact 2884651  T
Q  316 gttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaaga 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2884652 gttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaaga 2884739  T

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Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 228 - 403
Target Start/End: Complemental strand, 2899996 - 2899821
Alignment:
Q  228 cttaatctattttttctttcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaattt 327  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2899996 cttaatctatttctccttgcaggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttttaactgttactcaattt 2899897  T
Q  328 gctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaagtctaaga 403  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2899896 gctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaagtctaaga 2899821  T

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Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 2900612 - 2900466
Alignment:
Q  16 gacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagagga 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  2900612 gacattattcttatatccgatggtcaaattgtctatcaaggaccgcgtgaacatgttcttgacttttttgaatcagttggtttcaaatgtcctgagagga 2900513  T
Q  116 aaggtgcagctgactttcttcaagaagtaagtcaaagtttatatctt 162  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||    
T  2900512 aaggggtagctgactttcttcaagaagtaagtcaaagtttatatctt 2900466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 2874358 - 2874493
Alignment:
Q  16 gacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagagga 115  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||| ||| || |||||||||||||||||||  ||||||||||||||||||||||||    
T  2874358 gacattattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgttcttgaattttttgaatctattggtttcaaatgtcctgagagga 2874457  T
Q  116 aaggtgcagctgactttcttcaagaagtaagtcaaa 151  Q
    |||| |  ||||| || |||||||||||||||||||    
T  2874458 aaggcgttgctgatttccttcaagaagtaagtcaaa 2874493  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 2874715 - 2874806
Alignment:
Q  247 caggtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatt 338  Q
    |||||||||||||  |||||||||||||| |||||| |  |||||||  ||||||| ||||||||||| |||||||||||||| ||||||||    
T  2874715 caggtaacttcaagaaaggatcaagagcaatattggatgcacagagatgaaccatataggtttgtaacagttactcaatttgcagaggcatt 2874806  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 44225455 - 44225341
Alignment:
Q  31 tctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgact 130  Q
    |||||||| ||| |||| ||||| || || |||||| || ||||||| ||||||||| || | ||||||||||||||||| ||||||||||| |||||||    
T  44225455 tctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgctgctgact 44225356  T
Q  131 ttcttcaagaagtaa 145  Q
    |||||||||||||||    
T  44225355 ttcttcaagaagtaa 44225341  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 44236269 - 44236155
Alignment:
Q  31 tctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgact 130  Q
    |||||||| ||| |||| ||||| || || |||||| || ||||||| ||||||||| || | ||||||||||||||||| ||||||||||| |||||||    
T  44236269 tctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgact 44236170  T
Q  131 ttcttcaagaagtaa 145  Q
    |||||||||||||||    
T  44236169 ttcttcaagaagtaa 44236155  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 44213297 - 44213180
Alignment:
Q  28 atatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctg 127  Q
    ||||||||||| ||| |||| ||||| || || |||||| || ||||||| ||||| |||||  | ||||||||||||||||| ||||||||||  ||||    
T  44213297 atatctgatggccaagttgtataccatggcccccgcgaatatgttcttgactttttcgaatctatgggtttcaaatgtcctgaaaggaaaggtgttgctg 44213198  T
Q  128 actttcttcaagaagtaa 145  Q
    | ||||||||||||||||    
T  44213197 attttcttcaagaagtaa 44213180  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 44225344 - 44225231
Alignment:
Q  250 gtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcatacc 349  Q
    |||||||| || ||||||||||  ||||| |||||   ||||||  |||||||||| |||||||||||||||||||| |||||||| |||||||| | ||    
T  44225344 gtaacttccaaaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttcc 44225245  T
Q  350 atgttggaaggaaa 363  Q
    || |||| ||||||    
T  44225244 atattggtaggaaa 44225231  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 363
Target Start/End: Complemental strand, 44236158 - 44236045
Alignment:
Q  250 gtaacttcaaagaaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcatacc 349  Q
    |||||||| || ||||||||||  ||||| |||||   ||||||  |||||||||| |||||||||||||||||||| |||||||| |||||||| | ||    
T  44236158 gtaacttccaaaaaggatcaagcacagtactgggtgcgcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttcc 44236059  T
Q  350 atgttggaaggaaa 363  Q
    || |||| ||||||    
T  44236058 atattggtaggaaa 44236045  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 44213171 - 44213077
Alignment:
Q  262 aaggatcaagagcagtattgggttgacagagaaaaaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttgg 356  Q
    ||||||||||  ||||| |||||   ||||||  |||||||| | | ||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  44213171 aaggatcaagcacagtactgggtgcgcagagatcaaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattgg 44213077  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4498076 - 4498149
Alignment:
Q  16 gacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatc 89  Q
    |||||||||||||||||||| |||||| |||| |||||||| || || ||||| ||| ||||||| ||||||||    
T  4498076 gacattattcttatatctgagggtcaagttgtgtaccaaggtccacgtgaacacattgttgaattctttgaatc 4498149  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 39550733 - 39550630
Alignment:
Q  16 gacattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagagga 115  Q
    |||||||||||  | |||||| |||| ||| | |||||||| || || || ||  | ||||||||||| |||||| ||||||| ||||||||||| ||||    
T  39550733 gacattattctactctctgatagtcacattatataccaaggtccccgtgagcacgtgcttgaatttttcgaatcaattggttttaaatgtcctgatagga 39550634  T
Q  116 aagg 119  Q
    ||||    
T  39550633 aagg 39550630  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 39335082 - 39335171
Alignment:
Q  18 cattattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcc 107  Q
    |||||||||  | |||||| |||| ||| | |||||||| ||||| |||||  | ||||||||||| |||||| ||||||| ||||||||    
T  39335082 cattattctactctctgatagtcatattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtcc 39335171  T

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