View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11909_low_8 (Length: 411)
Name: NF11909_low_8
Description: NF11909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11909_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 182 - 392
Target Start/End: Original strand, 4028327 - 4028537
Alignment:
| Q |
182 |
taactaaccttgacctttttcttccaaatgtctcataatttaactctcttcattaagaggaattgttgggatctaattttcaaatggttggagctacgag |
281 |
Q |
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| T |
4028327 |
taactaaccttgacctttttcttccaaatgtctcataatttaactctcttcattaagaggaattgttgggatctaattttcaaatggttggagctacgag |
4028426 |
T |
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| Q |
282 |
atagtagatacctttctattgttcaattttctttgcaaaggaaagaagggtcggaaagtctctcacttgatttggttaacaacagtttggtgcattttgt |
381 |
Q |
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| T |
4028427 |
atagtagatacctttctattgttcaattttctttgcaaaggaaagaagggtcggaaagtctctcacttaatttggttaacaacagtttggtgcattttgt |
4028526 |
T |
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| Q |
382 |
tggaatgccat |
392 |
Q |
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| T |
4028527 |
tggaatgccat |
4028537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 4028148 - 4028300
Alignment:
| Q |
3 |
cttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatgcagttatcttcaaatttaattatattaacatagtgttaannnnnnna |
102 |
Q |
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| T |
4028148 |
cttaacaatttacatgctggaattatctgtatgaagcatctgacaatgacatgcagttatcttcaaatttaaatatattaacatagtgttaattttttta |
4028247 |
T |
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| Q |
103 |
ttaatgttggttgaaagaatttaaattctcacaattcaaactcttcatcaatt |
155 |
Q |
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| T |
4028248 |
ttaatgttggttgaaagaatttaaattctctcaattcaaactcttcatcaatt |
4028300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 26619056 - 26619007
Alignment:
| Q |
279 |
gagatagtagatacctttctattgttcaattttctttgcaaaggaaagaa |
328 |
Q |
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| T |
26619056 |
gagatagtagataattttctattgttcaatttgttttgcaaaggaaagaa |
26619007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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