View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11910_high_1 (Length: 617)
Name: NF11910_high_1
Description: NF11910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11910_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 71 - 599
Target Start/End: Complemental strand, 45565321 - 45564793
Alignment:
| Q |
71 |
tacgtttattcaatcgactgaatttaaaatgatggcattttctatataatagaggcactactgactgagcttatagttgatttgggctttgaattagcct |
170 |
Q |
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| T |
45565321 |
tacgtttattcaatcgactgaatttaaaaggatggcattttctatataatagaggcactactgactgagcttatagttgatttgggctttgaattagcct |
45565222 |
T |
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| Q |
171 |
ttatttgcgcaattttagtatgatcttacgtttggcttgcagggaacctcttataacaaatatcatgtggaggaacttgcttgtacaggtaaaatatatt |
270 |
Q |
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| T |
45565221 |
ttatttgcgcaattttagtatgatcttacgtttggcttgcagggaacctcttataacaaatatcatgtggaggaacttgcttgtacaggtaaaatatatt |
45565122 |
T |
|
| Q |
271 |
ttattcctcggacaccttttacaatcatcagtgaattggaagtagaagaaactaaagatcctactatttaacgataatcaatttggcattgcaggctatt |
370 |
Q |
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| T |
45565121 |
ttattcctcagacaccttttacaatcatcagtgaattggaagtagaagaaactaaagatcctactatttaacgataatcaatttggcattgcaggctatt |
45565022 |
T |
|
| Q |
371 |
tatcaagtgactgttcttctggttcttaactttgctggtgacagttttctacaagaggaatctgagacagataccttaacattgaagaatactataattt |
470 |
Q |
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| T |
45565021 |
tatcaagtgactgttcttctggttcttaactttgctggtgacagttttctacaagaggaatctgagacagataccttaacattgaagaatactataattt |
45564922 |
T |
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| Q |
471 |
tcaacgcattcgtcatgtgccaagttagtacatgttaatgaaaatttgagatatttggtcatgcccttgcttattattgtgtaattgggtttctcaggga |
570 |
Q |
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| T |
45564921 |
tcaacgcattcgtcatgtgccaagttagtacatgttaatgaaaatttgagatatttggtcatgcccttgcttattattgtgtaattgggtttctcaggga |
45564822 |
T |
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| Q |
571 |
tttatggattaaacccctcttcattctct |
599 |
Q |
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| T |
45564821 |
tttatggattaaacccctcttcattctct |
45564793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 45565452 - 45565382
Alignment:
| Q |
1 |
cactgttcttcatcataccaataaagcatgtgataactgagtttacaccgtgcacccttgtgtcttcatct |
71 |
Q |
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| T |
45565452 |
cactgttcttcatcataccaataaagcatgtgataactgagtttacaccgtgcacccttgtgtcttcatct |
45565382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 16695389 - 16695439
Alignment:
| Q |
210 |
cagggaacctcttataacaaatatcatgtggaggaacttgcttgtacaggt |
260 |
Q |
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| T |
16695389 |
cagggaacctctcataacaaatattatgtggaggaatttgctgatacaggt |
16695439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 1448062 - 1448118
Alignment:
| Q |
210 |
cagggaacctcttataacaaatatcatgtggaggaacttgcttgtacaggtaaaata |
266 |
Q |
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| T |
1448062 |
cagggaacctcttattacaaatatcatgtggagaaacttgatcgtacaggtaaaata |
1448118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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