View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11910_high_2 (Length: 585)
Name: NF11910_high_2
Description: NF11910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11910_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Complemental strand, 40944710 - 40944140
Alignment:
| Q |
12 |
aaaggggaatagcaaacccataattctattttata--------------caatctgcttcacaacatatgttgcattatataacaatgcgacaaaatttg |
97 |
Q |
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| T |
40944710 |
aaaggggaatagcaaacccataattctattttataacgtcaaagctgatcaatctgcttcacaacatatgttgcattatataacaatgcgacaaaatttg |
40944611 |
T |
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| Q |
98 |
gaaaccttgttatcaaaagccaagaaatgaggacaacactacatgccaaatccagcatgtgcacgtgccaagaacaaaacatggaagctaatctaaaaat |
197 |
Q |
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| T |
40944610 |
gaaaccttgttatcaaaagccaagaaatgaggacaacactacatgccaaatccagcatgtgcacgtgccaagaacaaaacatggaagctaatctaaaaat |
40944511 |
T |
|
| Q |
198 |
taatttaattagaatgcgttatcaatgacaatataaaatctttacactaatcacaaataatcctttatgtgattttcaaggtagttagaattaaaggtaa |
297 |
Q |
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| T |
40944510 |
taatttaattagaatgcattatcaatgacaatataaaatctttacactaatcacaaataatcctttatgtgattttcaaggtagttagaattaaaggtaa |
40944411 |
T |
|
| Q |
298 |
catcttcacagtgtnnnnnnntctttacagtttataattgatttatagtgtnnnnnnntcttcacacttgcagcatatcaacactgattttacaaacatt |
397 |
Q |
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| T |
40944410 |
catcttcacagtgtaaaaaaatctttacagtttataattgatttatagtgtaaaaaaatcttcacacttgcagcatatcaacactgattttacaaacatt |
40944311 |
T |
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| Q |
398 |
aaacacataaaaatgtgaaacagaaaaataatgtattaattatcaacaaagggaatatatcacgttgactcaatatttattactcattcgccaatgcaaa |
497 |
Q |
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| T |
40944310 |
aaacacataaaaatgtgaaacagaaaaataatgtattaattatcaacaaagggaatatatcacgttgactcaatatttattactcattcgccaatgcaaa |
40944211 |
T |
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| Q |
498 |
acaaacagcatacccagatgatcactaaattcataatacgcaagcagacatagaactacaatgttcaaacc |
568 |
Q |
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| T |
40944210 |
acaaacagcatacccagatgatcactaaattcataatacgcaagcagacatagaattacaatgttccaacc |
40944140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 40957659 - 40957546
Alignment:
| Q |
49 |
atctgcttcacaacatatgttgcattatataacaatgcgacaaaatttggaaaccttgttatc-aaaagccaagaaatgaggacaacactacatgccaaa |
147 |
Q |
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|||| |||||||||||||||||| || ||||| || ||| ||||||| || ||||||||||| |||| || ||||||||||||||| || ||| ||| |
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| T |
40957659 |
atctacttcacaacatatgttgctttgtataataacacgataaaatttagagaccttgttatcaaaaattaaaaaaatgaggacaacacaacgtgctaaa |
40957560 |
T |
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| Q |
148 |
tccagcatgtgcac |
161 |
Q |
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| T |
40957559 |
tccagcatgtgcac |
40957546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 40957434 - 40957374
Alignment:
| Q |
238 |
tttacactaatcacaaataatcctttatgtgattttcaaggtagttagaattaaaggtaac |
298 |
Q |
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| T |
40957434 |
tttacactaatcacaaataatcttttgggtgacttttaaggtagttcaaattgaaggtaac |
40957374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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