View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11910_high_6 (Length: 376)

Name: NF11910_high_6
Description: NF11910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11910_high_6
NF11910_high_6
[»] chr2 (5 HSPs)
chr2 (38-354)||(32648428-32648739)
chr2 (189-271)||(31385729-31385811)
chr2 (222-333)||(2336649-2336758)
chr2 (228-333)||(29873561-29873664)
chr2 (226-262)||(7784650-7784686)
[»] chr8 (1 HSPs)
chr8 (189-271)||(40991745-40991827)
[»] chr4 (4 HSPs)
chr4 (228-333)||(760220-760322)
chr4 (187-271)||(41603273-41603357)
chr4 (228-286)||(34544137-34544193)
chr4 (189-262)||(39099845-39099918)
[»] chr6 (3 HSPs)
chr6 (209-333)||(12092506-12092628)
chr6 (231-281)||(27226668-27226718)
chr6 (300-346)||(30618628-30618674)
[»] chr7 (1 HSPs)
chr7 (189-271)||(42730308-42730390)
[»] chr5 (3 HSPs)
chr5 (228-318)||(31509762-31509851)
chr5 (220-267)||(36522325-36522372)
chr5 (228-289)||(31509654-31509713)
[»] chr3 (2 HSPs)
chr3 (230-345)||(25317191-25317304)
chr3 (231-281)||(260798-260848)
[»] chr1 (1 HSPs)
chr1 (228-333)||(1188612-1188715)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 38 - 354
Target Start/End: Original strand, 32648428 - 32648739
Alignment:
Q  38 tatagcacaactcttaaacaagttcactttcaaatccaatgtgaactgatcaaagaatcgtataaattgcctttaaagacagtaggttttccaaacttgc 137  Q
    |||| ||||||||||||| || |||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  32648428 tataacacaactcttaaaaaaattcactttcaaatccaatgtgaact---caaagaatcgtataaattgcctttaaagaccgtaggttttccaaacttac 32648524  T
Q  138 ctcccctgtaaagagagcattatatttatattgtatatgagatatcattagtgttgtgtagtaaatttgaattagaagtcctacattggttagaaaaatg 237  Q
    ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  32648525 ctctcgtgtaaagagagcattatatttatatcgtatatgagatatcattagtgttgtgtagtatgtttgaattagaagtcctacattggttagaaaaatg 32648624  T
Q  238 gaggttgatcattttataactgagaggac--ccatataaactcattgccttgagacttttagttaaaatgtggtgtatctctcacttatgtggttgcttt 335  Q
    ||||||||||| ||||||||||||| |||    ||||||||||||||||||||||||||||||||||||   |||| |||||||||||||  ||||||||    
T  32648625 gaggttgatca-tttataactgagatgacttatatataaactcattgccttgagacttttagttaaaat---gtgtctctctcacttatgcagttgcttt 32648720  T
Q  336 tgtctaatgtgaatggttc 354  Q
    |||||||||||||||||||    
T  32648721 tgtctaatgtgaatggttc 32648739  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 31385729 - 31385811
Alignment:
Q  189 tgttgtgtagtaaatttgaattagaagtcctacattggttagaaaaatggaggttgatcattttataactgagaggacccata 271  Q
    |||||||||| || | ||| |||||||||  |||| ||||||||||||||||||||| ||  |||||| ||| ||||||||||    
T  31385729 tgttgtgtagcaagtgtgagttagaagtctgacatcggttagaaaaatggaggttgagcaccttataagtgaaaggacccata 31385811  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 2336649 - 2336758
Alignment:
Q  222 attggttagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaaaatgtggtgtatctctcact 321  Q
    |||| |||||||| |||||||||| || ||||||| |||||||||||  ||||| ||| |||||| ||| |||  ||||| |||||||||    ||||||    
T  2336649 attgcttagaaaagtggaggttgaacactttataagtgagaggaccc--ataaattcaatgccttaagattttgggttaagatgtggtgtccaactcact 2336746  T
Q  322 tatgtggttgct 333  Q
    | ||||||||||    
T  2336747 tgtgtggttgct 2336758  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 29873664 - 29873561
Alignment:
Q  228 tagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaaaatgtggtgtatctctcacttatgtg 327  Q
    ||||||| |||||||||| |||||||||| || |||||| ||||  ||||||||||||| ||  ||| ||| | | ||||  || |||||||||| ||||    
T  29873664 tagaaaagtggaggttgaacattttataagtgggaggactcata--aactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtg 29873567  T
Q  328 gttgct 333  Q
    ||||||    
T  29873566 gttgct 29873561  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 7784650 - 7784686
Alignment:
Q  226 gttagaaaaatggaggttgatcattttataactgaga 262  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  7784650 gttagataaatggaggttgaacattttataactgaga 7784686  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 40991745 - 40991827
Alignment:
Q  189 tgttgtgtagtaaatttgaattagaagtcctacattggttagaaaaatggaggttgatcattttataactgagaggacccata 271  Q
    |||||||||| || | ||| |||||||||| |||||| |||||||| |||||||||| || || |||| ||||||||||||||    
T  40991745 tgttgtgtaggaagtgtgagttagaagtcccacattgcttagaaaagtggaggttgaacacttcataagtgagaggacccata 40991827  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 760220 - 760322
Alignment:
Q  228 tagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaaaatgtggtgtatctctcacttatgtg 327  Q
    |||||||||| |||||||  | ||||||| |||||||||||  |||||||||||||||| ||| |||| || ||| |||||||| ||||||| || ||||    
T  760220 tagaaaaatgaaggttgagaactttataagtgagaggaccc--ataaactcattgccttaaga-ttttggtaaaagtgtggtgtctctctcatttgtgtg 760316  T
Q  328 gttgct 333  Q
    ||||||    
T  760317 gttgct 760322  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 41603357 - 41603273
Alignment:
Q  187 agtgttgtgtagtaaatttgaattagaagtcctacattggttagaaaaatggaggttgatcattttataactgagaggacccata 271  Q
    |||||||||||| |||| ||| |||||||||| || ||| || ||||| |||||||||| || ||||||| ||||| ||||||||    
T  41603357 agtgttgtgtagcaaatgtgagttagaagtcccacgttgcttggaaaagtggaggttgagcactttataagtgagaagacccata 41603273  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 34544137 - 34544193
Alignment:
Q  228 tagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgcctt 286  Q
    ||||||| ||||||||||||| ||||||| |||||||||||  ||||||||||||||||    
T  34544137 tagaaaagtggaggttgatcactttataaatgagaggaccc--ataaactcattgcctt 34544193  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 39099918 - 39099845
Alignment:
Q  189 tgttgtgtagtaaatttgaattagaagtcctacattggttagaaaaatggaggttgatcattttataactgaga 262  Q
    |||||||||  |||| ||| ||||||||| |||||  |||| |||| |||||||||| ||||||||||||||||    
T  39099918 tgttgtgtaacaaatgtgagttagaagtcatacatatgttaaaaaagtggaggttgaacattttataactgaga 39099845  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 12092628 - 12092506
Alignment:
Q  209 ttagaagtcctacattggttagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaaaatgtgg 308  Q
    ||||| |||| |||| || ||||||| |||||||||| || ||||||| |||||||| |||||  ||||||||||||| ||  ||| ||| | | |||||    
T  12092628 ttagatgtcccacatcggatagaaaagtggaggttgagcactttataagtgagaggatccata--aactcattgccttaaggttttgagtaagactgtgg 12092531  T
Q  309 tgtatctctcacttatgtggttgct 333  Q
    ||| |||||||||| || |||||||    
T  12092530 tgtctctctcacttgtgaggttgct 12092506  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 27226718 - 27226668
Alignment:
Q  231 aaaaatggaggttgatcattttataactgagaggacccatataaactcatt 281  Q
    |||| ||||||||||||||||||||| ||||| |||||||| | |||||||    
T  27226718 aaaagtggaggttgatcattttataaatgagatgacccataaacactcatt 27226668  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 30618674 - 30618628
Alignment:
Q  300 aaaatgtggtgtatctctcacttatgtggttgcttttgtctaatgtg 346  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||    
T  30618674 aaaatgtggtgtctctcttacttatgtggttgctcttgcctaatgtg 30618628  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 42730308 - 42730390
Alignment:
Q  189 tgttgtgtagtaaatttgaattagaagtcctacattggttagaaaaatggaggttgatcattttataactgagaggacccata 271  Q
    |||||||||| || | ||| |||||||| | |||| |||| ||||| ||||||||||||||||||||| ||| | ||||||||    
T  42730308 tgttgtgtagcaagtctgagttagaagttccacatcggtttgaaaagtggaggttgatcattttataaatgaaaagacccata 42730390  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 318
Target Start/End: Original strand, 31509762 - 31509851
Alignment:
Q  228 tagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaa-aatgtggtgtatctctc 318  Q
    ||||||| |||||||||| || ||||||| ||||||||| ||||  ||||||||||||||||  |||| | ||| |||||||||| ||||||    
T  31509762 tagaaaagtggaggttgagcactttataagtgagaggactcata--aactcattgccttgaggttttttggtaagaatgtggtgtctctctc 31509851  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 36522372 - 36522325
Alignment:
Q  220 acattggttagaaaaatggaggttgatcattttataactgagaggacc 267  Q
    ||||||| |||||||||||| ||||| |||||||||| ||||||||||    
T  36522372 acattggatagaaaaatggaagttgaacattttataagtgagaggacc 36522325  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 31509654 - 31509713
Alignment:
Q  228 tagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgag 289  Q
    ||||||| |||||||||| || ||||||| ||||||||| ||||  ||||||||||||||||    
T  31509654 tagaaaagtggaggttgagcactttataagtgagaggactcata--aactcattgccttgag 31509713  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 25317191 - 25317304
Alignment:
Q  230 gaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaaaatgtggtgtatctctcacttatgtggt 329  Q
    ||||| |||||||||| || ||| |||||||||||||||  |||||||  ||||||| ||  |||  || ||| ||| |||| |||||||||| ||||||    
T  25317191 gaaaagtggaggttgagcactttgtaactgagaggaccc--ataaacttgttgccttaaggttttgggtaaaagtgtagtgtgtctctcacttgtgtggt 25317288  T
Q  330 tgcttttgtctaatgt 345  Q
    ||||| || |||||||    
T  25317289 tgcttctgcctaatgt 25317304  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 260848 - 260798
Alignment:
Q  231 aaaaatggaggttgatcattttataactgagaggacccatataaactcatt 281  Q
    |||| ||||||||||||||||||||| ||||| |||||||| | |||||||    
T  260848 aaaagtggaggttgatcattttataaatgagatgacccataaacactcatt 260798  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 1188715 - 1188612
Alignment:
Q  228 tagaaaaatggaggttgatcattttataactgagaggacccatataaactcattgccttgagacttttagttaaaatgtggtgtatctctcacttatgtg 327  Q
    ||||||| ||||||||||  ||||||||| ||||| ||| ||||  |||||||||| || ||  |||  || ||| ||||| || |||||||||||||||    
T  1188715 tagaaaagtggaggttgaatattttataagtgagaagactcata--aactcattgctttaaggttttgggtaaaagtgtggcgtctctctcacttatgtg 1188618  T
Q  328 gttgct 333  Q
    ||||||    
T  1188617 gttgct 1188612  T

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