View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11910_low_10 (Length: 290)
Name: NF11910_low_10
Description: NF11910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11910_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 432076 - 432291
Alignment:
| Q |
11 |
gtaattaagtgcatttttctcttgtgttaggctaaacagtgagttcatcacaactgttcagcagcgtgggggtgccattatcaaagcaaggaagctgtct |
110 |
Q |
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| T |
432076 |
gtaattaagtgtatttttctcttgtgttaggctaaacagtgagttcatcacaactgttcagcagcgtgggggtgccattatcaaagcaaggaagctgtct |
432175 |
T |
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| Q |
111 |
agtgcattatcagcagcaagtgctgcttgtgatcatattcatgattgggttccaggtacacctaaggttcgtttttcttaatttgtctcatgtaaaattt |
210 |
Q |
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| T |
432176 |
agtgcattatcagcagcaagtgctgcttgtgatcatattcatgattgggttctaggtacacctaaggttcgtttttcttaatttgtctcatgtaaaattt |
432275 |
T |
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| Q |
211 |
caccagtacttattat |
226 |
Q |
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|||||||||||||||| |
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| T |
432276 |
caccagtacttattat |
432291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 431860 - 431826
Alignment:
| Q |
243 |
tctattatgatcaagtctagttagacatgtgatgt |
277 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
431860 |
tctattatgatcaagtctagttagacatgtgatgt |
431826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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