View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11910_low_16 (Length: 222)
Name: NF11910_low_16
Description: NF11910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11910_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1959250 - 1959452
Alignment:
| Q |
1 |
tgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgtttttacaaaggcatttcgataaa |
100 |
Q |
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| T |
1959250 |
tgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgcttttacaaaggcatttcgataaa |
1959349 |
T |
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| Q |
101 |
aagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1959350 |
aagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttct |
1959449 |
T |
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| Q |
201 |
tta |
203 |
Q |
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||| |
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| T |
1959450 |
tta |
1959452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 2024164 - 2024060
Alignment:
| Q |
97 |
taaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatc |
196 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2024164 |
taaaaagtgtttacaatggactctcaatgt--atatagtttcttcaaagttaactttggttgacattttctctatctctaggtataaccatcacttcatc |
2024067 |
T |
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| Q |
197 |
ttcttta |
203 |
Q |
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||||||| |
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| T |
2024066 |
ttcttta |
2024060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2024288 - 2024213
Alignment:
| Q |
1 |
tgtaaagaaaagaaagtgatgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatg |
76 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||| |||||||||| |||||| |
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| T |
2024288 |
tgtaaagaaaagaaagtgatggtgatatctagagagagtaaacactaatcaaagctagttgcgaagaaactatatg |
2024213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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