View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11910_low_8 (Length: 301)
Name: NF11910_low_8
Description: NF11910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11910_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 48815947 - 48815680
Alignment:
| Q |
19 |
ataaagcatttggaagcacaataattcaaacatttggcaacatgttatatatacacgaccgctcatattttagagtgtgccaatcatgactaggcgaatt |
118 |
Q |
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| T |
48815947 |
ataaagcatttggaagcacaataattcaaacatttggcaacatgttatatatacacgaccgctcatattttagagtgtgccaatcatgactaggcgaatt |
48815848 |
T |
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| Q |
119 |
aatgtttgcaaacaacaagtcaannnnnnngtcaccaccggccagtaggaagaattaagtgtaacgtggatgcttccttcctctcttcttcgaacaaagt |
218 |
Q |
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| T |
48815847 |
aatgtttgcaaacaacaagacaatttttttgtcaccatc----agtaggaagaattaagtgtaacgtggatgcttccttcctctcttcttcgaacaaagt |
48815752 |
T |
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| Q |
219 |
cagtataagaatgtgtatttaggatgatgagggtaggtatgtgttagcacagacgttgtggcttaccccttt |
290 |
Q |
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| T |
48815751 |
cagtataagaatgtgtatttaggatgatgagggtaggtatgtgttagcacagacgttgtggcttaccccttt |
48815680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 290
Target Start/End: Original strand, 21623610 - 21623740
Alignment:
| Q |
163 |
gtaggaagaattaagtgtaacgtggatgcttccttcctctcttcttcgaacaaagtcagtataagaatgtgtatttaggatgatgagggtaggtatgtgt |
262 |
Q |
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||||||||| |||||| ||||||||||||||||||| | ||||||| |||||||| ||||| || |||||||| |||||||||||| |||| ||||| |
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| T |
21623610 |
gtaggaagacttaagtataacgtggatgcttccttctccgcttcttc-aacaaagtaggtataggagtgtgtattcgggatgatgagggcaggtttgtgt |
21623708 |
T |
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| Q |
263 |
tagcacagacgtt----gtggcttaccccttt |
290 |
Q |
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| T |
21623709 |
cagcacgaacgttgcgcgtggcttaccccttt |
21623740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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