View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11911_high_1 (Length: 1382)
Name: NF11911_high_1
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_high_1 |
 | |
|
| [»] scaffold0214 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 745 - 1186
Target Start/End: Complemental strand, 1579652 - 1579211
Alignment:
| Q |
745 |
gacactttcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcacca |
844 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1579652 |
gacactcttatagccctcatacccaaggcggaccctcccaccacttacaaagactttcgccccattagcctatgcaatatcatctacaaaatcatcacca |
1579553 |
T |
|
| Q |
845 |
aagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgt |
944 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||| ||||||| |
|
|
| T |
1579552 |
aagtccttgttcatcgactgagacctattcttagcaatattattggtccctatcaaagcagttttctgcctagtaggggcgctactgacaactcaattgt |
1579453 |
T |
|
| Q |
945 |
tttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttg |
1044 |
Q |
| |
|
|||| ||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
1579452 |
tttgaaggaaataactcacttcatgtgcgggtcaaagaagaaagatggttatgtggctttcaaaattgatctggagaaagcctttgataatgtcaattgg |
1579353 |
T |
|
| Q |
1045 |
gattttctcagttcttgtcttcaaaattttggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctgga |
1144 |
Q |
| |
|
| ||||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
1579352 |
ggttttctccgttattgtcttcaagattttggattcccagatgccactatcaatctcatcatgcattgtgtttcttcttcaactttctctattctctaga |
1579253 |
T |
|
| Q |
1145 |
atggaaacaagttgcctccctttcatcctactcatgggctca |
1186 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1579252 |
atagaaacaagttgcctccctttcatcctactcatgggctca |
1579211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 9e-52
Query Start/End: Original strand, 1195 - 1363
Target Start/End: Complemental strand, 1579061 - 1578893
Alignment:
| Q |
1195 |
gacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaatcttc |
1294 |
Q |
| |
|
|||||||||||||| ||||||| ||| || ||||| ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
1579061 |
gacgttctcttgtttactaaagttcgaagctctcatcttagattcatcagagatttgttcaatcgtttcatcaaggtttcagggttaaaaattaatcttc |
1578962 |
T |
|
| Q |
1295 |
ataagtgtagagctttttattcaactggtactccacatagcaaaatcaccaatctcacctctatatctg |
1363 |
Q |
| |
|
| |||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1578961 |
acaagtctagagctttttattcttcaagtactcctcatagcaaaatcaccaatctcacctctatatctg |
1578893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 882 - 1160
Target Start/End: Complemental strand, 16770317 - 16770040
Alignment:
| Q |
882 |
tattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaag |
981 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||| ||| ||| || | |||| ||| |
|
|
| T |
16770317 |
tattattggtccttatcagagcagttttctgcctggtaggggcactactgacaactcaattgttttgcaggaaatttttcatttcttgagaagat-aaaa |
16770219 |
T |
|
| Q |
982 |
aagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcc |
1081 |
Q |
| |
|
|| ||||| |||||||||||||| || |||| || || ||||| |||||||||||||| | |||||||| | |||||| || |||||||||||| |
|
|
| T |
16770218 |
aaaaaagaaggttatgtggcttttaagcttgaccttgaaaaagcttttgataatgtcaactgagattttcttcataattgtctgcatgattttggattcc |
16770119 |
T |
|
| Q |
1082 |
cagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcc |
1160 |
Q |
| |
|
|||| || ||||| || || ||||| ||| |||||||||| ||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
16770118 |
cagacattaccatcaaacttattatgcactgtgtttcttcttccactttctctattttatggaatggtaacaaattgcc |
16770040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 792 - 1197
Target Start/End: Complemental strand, 27782076 - 27781671
Alignment:
| Q |
792 |
caaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcat-cgcctgtgacctattcttagcaatattattgg |
890 |
Q |
| |
|
|||||||||| | || || ||||| || |||||||| ||||||||||| || || |||||||| ||| | ||| | || || |||| |||||||| || |
|
|
| T |
27782076 |
caaagactttagacctatcagcctctgtaacatcatttacaaaatcattacaaaggtccttgt-catgcacctccgtcccatacttaataatattatagg |
27781978 |
T |
|
| Q |
891 |
tccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagat |
990 |
Q |
| |
|
||||||||||||||| || | ||| | |||| |||| |||||||| | ||||||||| ||||||| ||||| ||||| ||||| |||||||| | |
|
|
| T |
27781977 |
tccctatcaaagcagcttcctgccaggtaggggcacggctgacaactctattgttttgtaggaaattgtacactttatgcggagatctaagaagaagaaa |
27781878 |
T |
|
| Q |
991 |
ggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagatgcca |
1090 |
Q |
| |
|
|||| ||| ||||||||| |||| ||||||||||| |||||||||||||||| |||||| | ||| |||| ||||| | ||||| ||||||||| | |
|
|
| T |
27781877 |
ggttgtgtagctttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaagtgcttgccttcatgactttggtttcccagatatta |
27781778 |
T |
|
| Q |
1091 |
ctatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcctactcatgggctcaaaca |
1190 |
Q |
| |
|
| || |||||||| ||||| ||| | | || || |||||||| || || ||||| || ||||| ||||||| ||| | || |||||||| |||| ||| |
|
|
| T |
27781777 |
ccataaagctcatcatgcactgtgtcacctcatccactttctccattctatggaacgggaacaaaatgcctccatttaagccaactcatggcctcagaca |
27781678 |
T |
|
| Q |
1191 |
agatgac |
1197 |
Q |
| |
|
|| |||| |
|
|
| T |
27781677 |
aggtgac |
27781671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 775 - 1112
Target Start/End: Complemental strand, 23208329 - 23207992
Alignment:
| Q |
775 |
gaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattc |
874 |
Q |
| |
|
||||| |||||||| |||||||| ||| | ||||| || || |||||||| | |||||| || ||||| ||||| ||||| ||||| || ||||||||| |
|
|
| T |
23208329 |
gacccccccaccacatacaaagattttagacccatcagtctctgcaacataacctacaagattatcactaaagttcttgtgcatcgtctcagacctattc |
23208230 |
T |
|
| Q |
875 |
ttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcag |
974 |
Q |
| |
|
| || ||| ||||||| || | ||||||||||||| ||| | |||| | ||| |||||||| ||||||||||||||||||| | |||||| ||| | | |
|
|
| T |
23208229 |
tcagtaatcttattggcccttgccaaagcagttttctgccaggtaggggaacttctgacaactcaattgttttgcaggaaattattcactttatgaggaa |
23208130 |
T |
|
| Q |
975 |
atcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaatttt |
1074 |
Q |
| |
|
||||||| ||| | |||||||| |||||||| | || | |||||||| || |||||||||| | |||||| || | |||||| || || ||||| |
|
|
| T |
23208129 |
gtcaaagaggaagaaaggttatgttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgcctccaggatttt |
23208030 |
T |
|
| Q |
1075 |
ggattcccagatgccactatcaagctcataatgcattg |
1112 |
Q |
| |
|
|| || |||||| || ||||| ||||| |||||||| |
|
|
| T |
23208029 |
ggttttccagatattaccatcaaactcatcatgcattg |
23207992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 764 - 1186
Target Start/End: Original strand, 48847850 - 48848272
Alignment:
| Q |
764 |
tacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcct |
863 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48847850 |
tacccaaggccgaccctcccaccacttacaaagacttttgccccattagcctatgcaacatcttctacaaaatcatcaccaaagtccttgttcatcgcct |
48847949 |
T |
|
| Q |
864 |
gtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcac |
963 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48847950 |
aatacctattcttagcaatattattggtctctatcaaagcagttttctgtctggtaggggcactactgacaacacaattgttttgcaggaaatcactcac |
48848049 |
T |
|
| Q |
964 |
ttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtc |
1063 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
48848050 |
ttcatgcgcaggacaaagaagaaagatggttatatggctttcaaaattgatcttgagaaagcctttgataatgtcaattgggattttctcagatcttgtc |
48848149 |
T |
|
| Q |
1064 |
ttcaaaattttggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctcc |
1163 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
48848150 |
ttcaagattttggattcccagatgccacaatcaatctcatcatgcattgtgtttgttcttcaactttctccatcctctagaatggaaacaagttgcctcc |
48848249 |
T |
|
| Q |
1164 |
ctttcatcctactcatgggctca |
1186 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48848250 |
ctttcatcctactcatgggctca |
48848272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 1191 - 1361
Target Start/End: Original strand, 48848418 - 48848588
Alignment:
| Q |
1191 |
agatgacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaat |
1290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48848418 |
agatgacgttctcttgttaactaaagctcgcagctctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaagtaat |
48848517 |
T |
|
| Q |
1291 |
cttcataagtgtagagctttttattcaactggtactccacatagcaaaatcaccaatctcacctctatatc |
1361 |
Q |
| |
|
|||| |||| ||||||||||||||| | |||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
48848518 |
attcacaagtctagagctttttattcttcaggtactcctcagagaaaaatcaccaatctcacctctatatc |
48848588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 815 - 1163
Target Start/End: Original strand, 33803705 - 33804053
Alignment:
| Q |
815 |
tatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcc |
914 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| | || || || || |||||||||||| |||||||| || || || |||||||| |||| ||| |
|
|
| T |
33803705 |
tatgcaatatcatctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatattataggcccttaccaaagcagctttctgcc |
33803804 |
T |
|
| Q |
915 |
tgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgat |
1014 |
Q |
| |
|
|| |||| | ||| |||| || | ||||||||||||||||| | ||| | |||| | ||||| ||||||||| | || | |||||| || || |||| |
|
|
| T |
33803805 |
tggtaggggaacttctgataattccattgttttgcaggaaattattcattacatgagaagatctaagaagaaaaaaggatttgtggcgtttaagcttgac |
33803904 |
T |
|
| Q |
1015 |
ctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagatgccactatcaagctcataatgcattgta |
1114 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||| | || ||| | || ||||||| |||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
33803905 |
cttgagaaagcctttgataatgttaattgggattttcttaatttttgcttgcaggattttggtttcccagacatcaccatcaagctcatcatgcattgtg |
33804004 |
T |
|
| Q |
1115 |
tttcttcttcaactttctctatcctctggaatggaaacaagttgcctcc |
1163 |
Q |
| |
|
|||| || || || | |||||| || |||||||||||||| ||||||| |
|
|
| T |
33804005 |
tttcctcatctacatactctatactgtggaatggaaacaaaatgcctcc |
33804053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 790 - 1181
Target Start/End: Complemental strand, 46784920 - 46784529
Alignment:
| Q |
790 |
tacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattg |
889 |
Q |
| |
|
|||||||||||| | || || ||||| |||||||| | ||||||||||||||||||||||||||| | ||||| | || ||||| | |||||||||| |
|
|
| T |
46784920 |
tacaaagactttagacctatcagcctttgcaacataacctacaaaatcatcaccaaagtccttgtcaaccgcctcag-ccgattctcaataatattattg |
46784822 |
T |
|
| Q |
890 |
gtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaaga-agaaag |
988 |
Q |
| |
|
||||||| ||||| ||||||| || | || | |||| |||||||| | ||||||||||||||||| |||||||||| | ||||| ||| | ||| |
|
|
| T |
46784821 |
gtccctaccaaagtagttttctaccaggtaagggcacctctgacaactctattgttttgcaggaaattgttcacttcatgtggagatccaagcgaaaaaa |
46784722 |
T |
|
| Q |
989 |
atggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagatgc |
1088 |
Q |
| |
|
| || | || ||||||||| |||| || || ||||| || |||||||| |||| ||| || || | |||||||||||| ||||||| || || || |
|
|
| T |
46784721 |
aaggcttcgtcgctttcaaacttgaccttgaaaaagctttcgataatgtaaattgggagttccttaattcttgtcttcatgattttgggtttcctagcgc |
46784622 |
T |
|
| Q |
1089 |
cactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcctactcatgg |
1181 |
Q |
| |
|
||| ||||||||||| ||||||||| || | || ||||||||||| |||| ||||||||||| || ||||| || || | ||||||||||| |
|
|
| T |
46784621 |
caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatgg |
46784529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 752 - 986
Target Start/End: Complemental strand, 7588112 - 7587878
Alignment:
| Q |
752 |
tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtcct |
851 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||| || | ||||||||||| ||||||||||| |||||||| | |||||| |||||||||||||| | |
|
|
| T |
7588112 |
tcattgccctcattcccaaaactgaccctcccacaacatttaaagactttcgacccattagcctttgcaacattgtgtacaaactcatcaccaaagtctt |
7588013 |
T |
|
| Q |
852 |
tgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcag |
951 |
Q |
| |
|
||||| || || |||| ||||||| ||||||||| ||||| ||||| ||||||| ||| |||| | || |||||||| |||||||||||||| |
|
|
| T |
7588012 |
ggttcaccgtctcagaccgattcttaatgttattattggcccctaccaaagtagttttctacctcgtaggggaacaactgacaattcaattgttttgcag |
7587913 |
T |
|
| Q |
952 |
gaaatcactcacttcatgcgcagatcaaagaagaa |
986 |
Q |
| |
|
||||| |||||||||| | ||||| || ||||| |
|
|
| T |
7587912 |
gaaattgttcacttcatgagaagatccaaaaagaa |
7587878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 752 - 956
Target Start/End: Original strand, 3881379 - 3881583
Alignment:
| Q |
752 |
tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtcct |
851 |
Q |
| |
|
||||||| ||||| ||||| |||| | |||||| |||| |||||||| | || || ||||| ||||| || ||||| || || ||||| |||||||| |
|
|
| T |
3881379 |
tcatagcactcattcccaaaactgatcttcccactacttttaaagacttcaggcctatcagcctttgcaatataatctataagattatcactaaagtcct |
3881478 |
T |
|
| Q |
852 |
tgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcag |
951 |
Q |
| |
|
||| ||||| ||| ||||||| || | || ||||||| || || ||||||||||||| ||||| |||| | ||| |||| ||| | |||||||||||| |
|
|
| T |
3881479 |
tgtgcatcgtctgagacctatactcaataagcttattggcccttaccaaagcagttttctgcctggtaggggaacttctgataactctattgttttgcag |
3881578 |
T |
|
| Q |
952 |
gaaat |
956 |
Q |
| |
|
||||| |
|
|
| T |
3881579 |
gaaat |
3881583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 774 - 956
Target Start/End: Complemental strand, 54477869 - 54477686
Alignment:
| Q |
774 |
tgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctatt |
873 |
Q |
| |
|
|||||| ||||| ||||| |||||||| | ||||| ||||| || || |||||||||||||| ||||| || || | ||||| || || | |||||| |
|
|
| T |
54477869 |
tgacccacccactacttataaagacttcagacccatcagcctttgtaatatcatctacaaaattatcacaaaggttttggttcaccgactaaggcctatt |
54477770 |
T |
|
| Q |
874 |
cttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattg-ttttgcaggaaat |
956 |
Q |
| |
|
|||| || |||||||| |||| ||||||||||||| ||||| ||| ||||| | || ||| | |||| ||||||||||||| |
|
|
| T |
54477769 |
cttactaacattattggcccctgccaaagcagttttctgcctggaaggggcacttcagataactctattgtttttgcaggaaat |
54477686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 2e-62; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 752 - 1186
Target Start/End: Original strand, 26790985 - 26791419
Alignment:
| Q |
752 |
tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtcct |
851 |
Q |
| |
|
||||||||||||| ||||| | ||||||||| || || ||||||||| | ||||||||||| || ||||||||||||||||| ||||| |||||||| |
|
|
| T |
26790985 |
tcatagccctcattcccaaagttgaccctcctttaacctataaagactttagacccattagcctttgtaacatcatctacaaaattatcactaaagtcct |
26791084 |
T |
|
| Q |
852 |
tgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcag |
951 |
Q |
| |
|
||| |||||||| ||||||| |||| |||||||||||||| || ||||| ||||| | ||||| |||| |||| |||||||| | |||||||||||| |
|
|
| T |
26791085 |
tgtccatcgcctcagacctatccttaataatattattggtccttaccaaagtagtttcctgcctggtaggagcaccactgacaatgccattgttttgcag |
26791184 |
T |
|
| Q |
952 |
gaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttc |
1051 |
Q |
| |
|
||| | | ||||| |||||||| ||| |||||||| | || || |||||||| || |||||| |||||||||||||||||||||| || | ||| |||| |
|
|
| T |
26791185 |
gaagttattcactacatgcgcatatctaagaagaagaaagggtacgtggcttttaagattgatttagagaaagcctttgataatgttaactgggactttc |
26791284 |
T |
|
| Q |
1052 |
tcagttcttgtcttcaaaattttggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaa |
1151 |
Q |
| |
|
|| | ||||| ||| ||||||| ||||| ||| |||| ||||||||||| |||||||| || |||| || | |||||||| || ||||||||||| |
|
|
| T |
26791285 |
tccgatcttgcctttgtgattttggcttcccggataccaccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaa |
26791384 |
T |
|
| Q |
1152 |
caagttgcctccctttcatcctactcatgggctca |
1186 |
Q |
| |
|
| ||||||||| || | ||||||||||| |||| |
|
|
| T |
26791385 |
taggttgcctcctttcgagcctactcatggcctca |
26791419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 790 - 1163
Target Start/End: Original strand, 177201 - 177574
Alignment:
| Q |
790 |
tacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattg |
889 |
Q |
| |
|
|||||||| ||||| || || ||||| | |||||| | |||||||||||| ||||||||| |||| ||||| || | || ||||||| ||||||||| |
|
|
| T |
177201 |
tacaaagattttcggcctatcagcctttacaacataacctacaaaatcattaccaaagtcattgtgcatcgtctccggccgattcttaatgatattattg |
177300 |
T |
|
| Q |
890 |
gtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaaga |
989 |
Q |
| |
|
||||||| ||||||||||| | || | |||| ||||| |||||||| | ||||||||||||||||| ||| || ||||| |||||||| | |||| | |
|
|
| T |
177301 |
gtccctaccaaagcagtttcctgcaaggtaggggcacttctgacaactctattgttttgcaggaaattgttcattttatgcggagatcaaaaaggaaaaa |
177400 |
T |
|
| Q |
990 |
tggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagatgcc |
1089 |
Q |
| |
|
||||| || ||||||||| ||||||| |||||||| ||||| ||||| |||| ||| ||||| || || ||||| ||| ||||||| ||||| |||| |
|
|
| T |
177401 |
aggttacgttgctttcaaacttgatcttgagaaagcttttgacaatgtgaattgggagtttcttagatcgtgtctccaagattttggtttcccggatgat |
177500 |
T |
|
| Q |
1090 |
actatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctcc |
1163 |
Q |
| |
|
|| ||||| ||||| ||||||||| | |||||||||| |||||| | || |||||||||||||| | |||||| |
|
|
| T |
177501 |
acaatcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcc |
177574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 758 - 1042
Target Start/End: Original strand, 39012200 - 39012484
Alignment:
| Q |
758 |
ccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttca |
857 |
Q |
| |
|
||||||| |||||| | ||||| |||| ||||| ||||||||| | ||||||||||| ||||| || |||||| ||||||| |||||| | ||||| |
|
|
| T |
39012200 |
ccctcattcccaagaccgacccccccagcacttttaaagactttagacccattagcctctgcaatattgcttacaaactcatcactaaagtcttggttca |
39012299 |
T |
|
| Q |
858 |
tcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatc |
957 |
Q |
| |
|
||||| |||| ||||||| ||| ||||| ||||||||||| ||||||| |||| |||| |||| |||||||| | ||||||||||||||||| |
|
|
| T |
39012300 |
ccgcctcagaccaattcttaatgttatcattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaata |
39012399 |
T |
|
| Q |
958 |
actcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatt |
1042 |
Q |
| |
|
||||||||| | | | | || ||||| | || ||||||||||||||| | ||||| || ||||||||||||||||| |||| |
|
|
| T |
39012400 |
gtacacttcatgaggaaaaccaaaaagaagaaagggtatgtggctttcaaactagatcttgaaaaagcctttgataatgttaatt |
39012484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 779 - 956
Target Start/End: Original strand, 572883 - 573060
Alignment:
| Q |
779 |
ctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttag |
878 |
Q |
| |
|
|||||| |||||||||||| ||| | ||||| ||||| ||||| | |||||||| |||||||| ||||| ||||| ||||| || |||||||||||| |
|
|
| T |
572883 |
ctcccatcacttacaaagattttagacccatcagcctctgcaatacgatctacaatatcatcacaaaagttcttgtgcatcgtcttagacctattcttaa |
572982 |
T |
|
| Q |
879 |
caatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
|| ||||| || || || ||||||||||||| || || |||| ||| |||| ||| ||||||||||||||||||| |
|
|
| T |
572983 |
taacattatcggcccttaccaaagcagttttctgcatggtagggaaacttctgataactcaattgttttgcaggaaat |
573060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 774 - 969
Target Start/End: Complemental strand, 14654138 - 14653943
Alignment:
| Q |
774 |
tgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctatt |
873 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||||| ||||| || || || | |||||||| || || || || || ||||| | || | |||||| |
|
|
| T |
14654138 |
tgacccacccaccacttacaaagacttcaggcccatcagcctttgtaatattacttacaaaattattacaaaggtactggttcacaggcttcggcctatt |
14654039 |
T |
|
| Q |
874 |
cttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatg |
969 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| ||||| |||| ||||| | || ||| | ||||||||||||||||| | ||| |||||| |
|
|
| T |
14654038 |
cttactaacattattggtccctatcaaagcagttttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
14653943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 1191 - 1317
Target Start/End: Original strand, 26791565 - 26791691
Alignment:
| Q |
1191 |
agatgacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaat |
1290 |
Q |
| |
|
|||||| |||||||| ||||| ||||| ||| |||||||| | |||||||| || ||||||||||| |||||||| | || || || ||||||||| |
|
|
| T |
26791565 |
agatgatgttctcttattcaccaaagccaacagcactcagcttcgcttcatcagggacttgtttgatcgtttcagcaaattctccggtttgaaaattaat |
26791664 |
T |
|
| Q |
1291 |
cttcataagtgtagagctttttattca |
1317 |
Q |
| |
|
||||| |||| |||||||||||||||| |
|
|
| T |
26791665 |
cttcacaagtctagagctttttattca |
26791691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 938 - 1040
Target Start/End: Complemental strand, 1487612 - 1487510
Alignment:
| Q |
938 |
caattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgt |
1037 |
Q |
| |
|
||||||||||||||||||| |||||||||| | | ||| || ||||| | || ||||||||||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
1487612 |
caattgttttgcaggaaattgttcacttcatgagaatatccaaaaagaagaaaggctatgtggcttttaaacttgatctcgagaaagcttttgataatgt |
1487513 |
T |
|
| Q |
1038 |
caa |
1040 |
Q |
| |
|
||| |
|
|
| T |
1487512 |
caa |
1487510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 805 - 956
Target Start/End: Complemental strand, 35135649 - 35135498
Alignment:
| Q |
805 |
cccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagca |
904 |
Q |
| |
|
||||||||||| |||||||| || |||||||| ||||| || || | |||||||| || | |||||||| | || |||||| ||||||| ||||||| |
|
|
| T |
35135649 |
cccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaacattattagtccctaccaaagca |
35135550 |
T |
|
| Q |
905 |
gttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
||||| ||||| |||| | || | |||||| | ||||||||||||||||| |
|
|
| T |
35135549 |
gttttttgcctggtaggggtacctcagacaactccattgttttgcaggaaat |
35135498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 781 - 956
Target Start/End: Original strand, 40327871 - 40328046
Alignment:
| Q |
781 |
cccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagca |
880 |
Q |
| |
|
||||| ||||||||||| || | ||||||||||| |||||||| || |||||||| ||||| || || | |||||||| || | |||||||| | | |
|
|
| T |
40327871 |
cccactacttacaaagatttcagacccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcacta |
40327970 |
T |
|
| Q |
881 |
atattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
| |||||||||||||| ||||| |||||| |||| |||| | || | |||||| | ||||||||||||||||| |
|
|
| T |
40327971 |
acattattggtccctaccaaagtagtttttttcctggtaggggtacctcagacaactccattgttttgcaggaaat |
40328046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 805 - 956
Target Start/End: Original strand, 19265133 - 19265284
Alignment:
| Q |
805 |
cccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagca |
904 |
Q |
| |
|
||||||||||| |||||||| || |||||||| ||||| || || | |||||||| || | |||||||| | || |||||||||||||| ||||||| |
|
|
| T |
19265133 |
cccattagcctttgcaacattatttacaaaattatcacaaaggtattggttcatcggctaaggcctattctcactaacattattggtccctaccaaagca |
19265232 |
T |
|
| Q |
905 |
gttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
|||| ||||| |||| | || |||||| | ||||||||||||||||| |
|
|
| T |
19265233 |
attttttgcctggtaggggtacccaagacaactccattgttttgcaggaaat |
19265284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 4e-54; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 4e-54
Query Start/End: Original strand, 778 - 1166
Target Start/End: Complemental strand, 17718815 - 17718427
Alignment:
| Q |
778 |
cctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattctta |
877 |
Q |
| |
|
||||| ||||| |||||||||||| | || ||||| | || ||||| ||||||||||||| || |||||| | ||||| || || ||||||| |||| |
|
|
| T |
17718815 |
cctccgaccacatacaaagactttaggccaattagtttgtgtaacattgtctacaaaatcattactaaagtcttggttcagcggctcagacctatcctta |
17718716 |
T |
|
| Q |
878 |
gcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatc |
977 |
Q |
| |
|
||||||||||| || || |||||||| |||| ||||| |||| | ||| |||| ||| | ||||||||||||||||||| ||| | |||| | ||||| |
|
|
| T |
17718715 |
ataatattattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatc |
17718616 |
T |
|
| Q |
978 |
aaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttgga |
1077 |
Q |
| |
|
||||||||| | ||||||||||||||||| | || || ||||||||||||||||||||||||| ||||||||| | |||||||| || ||||||| |
|
|
| T |
17718615 |
taagaagaaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggt |
17718516 |
T |
|
| Q |
1078 |
ttcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctt |
1166 |
Q |
| |
|
||||| || | ||| ||||||||||| ||||||||| |||| || || || |||||||| | |||||||||||||| |||||||||| |
|
|
| T |
17718515 |
ttcccggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctccctt |
17718427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 4e-54
Query Start/End: Original strand, 778 - 1166
Target Start/End: Complemental strand, 19020044 - 19019656
Alignment:
| Q |
778 |
cctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattctta |
877 |
Q |
| |
|
||||| ||||| |||||||||||| | || ||||| | || ||||| ||||||||||||| || |||||| | ||||| || || ||||||| |||| |
|
|
| T |
19020044 |
cctccgaccacatacaaagactttaggccaattagtttgtgtaacattgtctacaaaatcattactaaagtcttggttcagcggctcagacctatcctta |
19019945 |
T |
|
| Q |
878 |
gcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatc |
977 |
Q |
| |
|
||||||||||| || || |||||||| |||| ||||| |||| | ||| |||| ||| | ||||||||||||||||||| ||| | |||| | ||||| |
|
|
| T |
19019944 |
ataatattattggcccttaccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaatcattcattacatgagaagatc |
19019845 |
T |
|
| Q |
978 |
aaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttgga |
1077 |
Q |
| |
|
||||||||| | ||||||||||||||||| | || || ||||||||||||||||||||||||| ||||||||| | |||||||| || ||||||| |
|
|
| T |
19019844 |
taagaagaaaaaaggttatgtggctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggt |
19019745 |
T |
|
| Q |
1078 |
ttcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctt |
1166 |
Q |
| |
|
||||| || | ||| ||||||||||| ||||||||| |||| || || || |||||||| | |||||||||||||| |||||||||| |
|
|
| T |
19019744 |
ttcccggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctccctt |
19019656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 880 - 1154
Target Start/End: Complemental strand, 53608655 - 53608381
Alignment:
| Q |
880 |
aatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaa |
979 |
Q |
| |
|
||||||||||| || | |||||||| |||| ||||| |||| | ||| |||| ||| | ||||||||||||||||| | ||| | ||| ||||||| |
|
|
| T |
53608655 |
aatattattggcccttgccaaagcagctttctgcctggtaggggaacttctgataactccattgttttgcaggaaattattcattatatgaaaagatcaa |
53608556 |
T |
|
| Q |
980 |
agaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggatt |
1079 |
Q |
| |
|
|||||||| | || |||||||||||||| | ||||| |||||||| |||||||||||||||| ||||||||| | || ||| || || ||||||| || |
|
|
| T |
53608555 |
agaagaaaaaaggctatgtggctttcaagctcgatcttgagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggttt |
53608456 |
T |
|
| Q |
1080 |
cccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaa |
1154 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||| |||| || || || |||||||| || |||||||||||||| |
|
|
| T |
53608455 |
cccagacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaa |
53608381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 781 - 1113
Target Start/End: Original strand, 23424194 - 23424526
Alignment:
| Q |
781 |
cccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagca |
880 |
Q |
| |
|
||||||||||||||||| ||| | ||||| || ||||||||||| |||||||| || ||||| ||||| ||||| ||||| || ||||||| || || | |
|
|
| T |
23424194 |
cccaccacttacaaagattttagacccataagtctatgcaacataatctacaagattatcactaaagttcttgtgcatcgtctcagacctatcctcagta |
23424293 |
T |
|
| Q |
881 |
atattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaa |
980 |
Q |
| |
|
|| ||||||| || | |||||||| |||| |||| |||| | ||| |||| ||| ||||||||||||||||||| | |||||||||| | | |||||| |
|
|
| T |
23424294 |
atcttattggcccttgccaaagcagatttctgcctagtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaaatcaaa |
23424393 |
T |
|
| Q |
981 |
gaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattc |
1080 |
Q |
| |
|
|| ||| | |||||||| |||||||| | || | |||||||| || |||||||||| | |||||| || | |||||| ||||| | ||||| || |
|
|
| T |
23424394 |
gaggaagaaaggttatgttgctttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggtttt |
23424493 |
T |
|
| Q |
1081 |
ccagatgccactatcaagctcataatgcattgt |
1113 |
Q |
| |
|
||||| ||| ||||||||||| || |||||| |
|
|
| T |
23424494 |
ccagacatcaccatcaagctcatcatacattgt |
23424526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 758 - 1042
Target Start/End: Complemental strand, 3660092 - 3659808
Alignment:
| Q |
758 |
ccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttca |
857 |
Q |
| |
|
||||||| |||||| | ||||| |||| ||||| ||||||||| | ||||||||||| ||||| || |||||| ||||||| |||||| | ||||| |
|
|
| T |
3660092 |
ccctcattcccaagaccgacccccccagcacttttaaagactttagacccattagcctctgcaatattgcttacaaactcatcactaaagtcttggttca |
3659993 |
T |
|
| Q |
858 |
tcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatc |
957 |
Q |
| |
|
||||| |||| ||||||| ||| ||||| ||||||||||| ||||||| |||| |||| |||| |||||||| | ||||||||||||||||| |
|
|
| T |
3659992 |
ccgcctcagaccaattcttaatgttatcattggcccctatcaaagtagttttctacctggtaggggcaccactgacaattcgattgttttgcaggaaata |
3659893 |
T |
|
| Q |
958 |
actcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatt |
1042 |
Q |
| |
|
||||||||| | | | | || ||||| | || ||||||||||||||| | ||||| || ||||||||||||||||| |||| |
|
|
| T |
3659892 |
gtacacttcatgaggaaaaccaaaaagaagaaagggtatgtggctttcaaactggatcttgaaaaagcctttgataatgttaatt |
3659808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 882 - 1163
Target Start/End: Complemental strand, 11890092 - 11889811
Alignment:
| Q |
882 |
tattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaag |
981 |
Q |
| |
|
|||||| |||||||| |||||||| || | ||| | |||| |||| |||||||||| ||||||||||||||||| ||||| ||| ||||| ||| |
|
|
| T |
11890092 |
tattataggtccctaccaaagcagcttcctgccaggtaggggcacggctgacaacactattgttttgcaggaaattgtacactttatgtagagatctaag |
11889993 |
T |
|
| Q |
982 |
aagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcc |
1081 |
Q |
| |
|
||||| | || ||||| ||||||||| |||| ||||||||||| |||||||||||||| | |||||| | ||| |||| || || | ||||| |||| |
|
|
| T |
11889992 |
aagaagaaaggctatgtagctttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttggtttcc |
11889893 |
T |
|
| Q |
1082 |
cagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctcc |
1163 |
Q |
| |
|
||||| || || |||||||| ||||| ||| | | || || |||||||| ||||| |||||||| ||||| ||||||| |
|
|
| T |
11889892 |
cagatattaccataaagctcatcatgcactgtgtcacctcatccactttctccatcctatggaatgggaacaaaatgcctcc |
11889811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 774 - 969
Target Start/End: Original strand, 11896837 - 11897032
Alignment:
| Q |
774 |
tgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctatt |
873 |
Q |
| |
|
|||||| |||||||||||||||||||| | || |||||||| || || || | |||||||| || || || ||||| ||||| | || | |||||| |
|
|
| T |
11896837 |
tgacccacccaccacttacaaagacttcaggcctattagcctttgtaatattacttacaaaattattacaaaggtcctggttcacaggcttcggcctatt |
11896936 |
T |
|
| Q |
874 |
cttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatg |
969 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||| ||||| |||| ||||| | || ||| | ||||||||||||||||| | ||| |||||| |
|
|
| T |
11896937 |
cttactaacattattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
11897032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 786 - 1145
Target Start/End: Complemental strand, 38647631 - 38647272
Alignment:
| Q |
786 |
cacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatatt |
885 |
Q |
| |
|
||||||||||||||| | ||||| || || |||||||| |||||||| || || || ||||| ||||| || || || |||||||||| | |||||| |
|
|
| T |
38647631 |
cacttacaaagacttcagacccataagtctctgcaacataatctacaagattattactaaagttcttgtgcaccgtctcagacctattctcaataatatt |
38647532 |
T |
|
| Q |
886 |
attggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaaga |
985 |
Q |
| |
|
||||| | ||||||||||| ||||| ||||| ||| | || |||| || ||||||||||||||||||| || |||||| | | ||| || || | |
|
|
| T |
38647531 |
attggcctctatcaaagcatttttctgcctggtagaggaacatctgataattcaattgttttgcaggaaattgtacatttcatgagaaaatccaaaaata |
38647432 |
T |
|
| Q |
986 |
aagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccaga |
1085 |
Q |
| |
|
|| | |||||||| | |||||| |||| || || ||||| |||||||||||||| | ||| || || | |||||| || || ||||||| || ||||| |
|
|
| T |
38647431 |
aaaagggttatgtaacattcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccaga |
38647332 |
T |
|
| Q |
1086 |
tgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaa |
1145 |
Q |
| |
|
||| ||||||||||| ||||||||| |||| || || || |||||||| || ||||| |
|
|
| T |
38647331 |
catcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaa |
38647272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 889 - 956
Target Start/End: Complemental strand, 49150116 - 49150049
Alignment:
| Q |
889 |
ggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
||||||||| | |||||||||| ||||| |||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
49150116 |
ggtccctattagagcagttttctgcctggtaggggcactaatgacaactcaattgttttgcaggaaat |
49150049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 786 - 956
Target Start/End: Complemental strand, 15473894 - 15473725
Alignment:
| Q |
786 |
cacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatatt |
885 |
Q |
| |
|
|||||||||||| || | ||||||| ||| ||||| || | |||||||||||||| || || | || ||| |||| | ||| |||||| |||||| |
|
|
| T |
15473894 |
cacttacaaagatttcagacccattatcctttgcaatatagtttacaaaatcatcactaaggttttagtgcatagccttaggccttttcttaataatatt |
15473795 |
T |
|
| Q |
886 |
attggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||| |||| | ||| |||| ||| ||||||||||||||||||| |
|
|
| T |
15473794 |
attggcccctatcaaagtagttttctgcctggtagg-gtacttctgataactcaattgttttgcaggaaat |
15473725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 774 - 1160
Target Start/End: Complemental strand, 26433156 - 26432770
Alignment:
| Q |
774 |
tgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctatt |
873 |
Q |
| |
|
|||||| || |||||||||||||||||| | || || ||||| || || || || |||||||| || || || || || ||||| | || | |||||| |
|
|
| T |
26433156 |
tgaccccccaaccacttacaaagactttaggcctatcagcctttgtaatattatttacaaaattattactaaggttctagttcacagacttcggcctatt |
26433057 |
T |
|
| Q |
874 |
cttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgca |
973 |
Q |
| |
|
||| || |||||||| ||||||||||||||||| | ||||| |||| | || | || ||| | ||||||||||||||||| ||| |||||| | |
|
|
| T |
26433056 |
ctttctaacattattggcccctatcaaagcagtttcctgcctggtaggggtaccgcagataactctattgttttgcaggaaatttttcatttcatgaaga |
26432957 |
T |
|
| Q |
974 |
gatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattt |
1073 |
Q |
| |
|
|||| |||| |||| | |||| || |||||||| |||||||||||||||| ||||| || ||||| | ||| ||||| || || || || |||| |
|
|
| T |
26432956 |
gatcgaagaggaaaaagggtttcgtagctttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattt |
26432857 |
T |
|
| Q |
1074 |
tggattcccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcc |
1160 |
Q |
| |
|
||| || ||||| ||| ||||| ||||| ||||||||| | ||||| |||| | |||||| || |||||||| ||||||||||| |
|
|
| T |
26432856 |
tgggtttccagacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgcc |
26432770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 805 - 954
Target Start/End: Complemental strand, 55025229 - 55025080
Alignment:
| Q |
805 |
cccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagca |
904 |
Q |
| |
|
||||| ||||| |||||||| | |||||| |||||||||||||| | ||||| ||||| || ||||| | ||||||||| ||||||||||| | |
|
|
| T |
55025229 |
cccatcagcctgtgcaacattgtgtacaaactcatcaccaaagtcttggttcaccgcctccagcccattctaaatgctattattggcccctatcaaagta |
55025130 |
T |
|
| Q |
905 |
gttttccgcctgataggtgcactactgacaacacaattgttttgcaggaa |
954 |
Q |
| |
|
|||||| |||| |||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
55025129 |
gttttctacctggtaggggcaccactgacaattcaattgttttgcaggaa |
55025080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 11894301 - 11894357
Alignment:
| Q |
15 |
caaggttgatacaaacaccctgaaaatagaaaggggaaagtttgccaaagtctgtgt |
71 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| || |||||||||| ||||||||| |
|
|
| T |
11894301 |
caaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccagagtctgtgt |
11894357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 752 - 1112
Target Start/End: Original strand, 8631 - 8991
Alignment:
| Q |
752 |
tcatagccctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtcct |
851 |
Q |
| |
|
|||||||||| || ||||| | |||||||||| || | |||||||||| | ||||||||||| || ||||||||||||||||| ||||| || || || |
|
|
| T |
8631 |
tcatagcccttatccccaaagttgaccctcccttaaccttcaaagactttagacccattagcctttgtaacatcatctacaaaattatcactaaggttct |
8730 |
T |
|
| Q |
852 |
tgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcag |
951 |
Q |
| |
|
||| || ||||| ||||||| |||| ||||||||||||| || ||||||||||| | ||||| |||| |||| |||||||| | |||||||||||| |
|
|
| T |
8731 |
tgtccaccgcctcagacctatccttaatgatattattggtccttaccaaagcagtttcctgcctggtaggggcaccactgacaatgccattgttttgcag |
8830 |
T |
|
| Q |
952 |
gaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttc |
1051 |
Q |
| |
|
||||| | ||||| |||||| ||||| |||||||| | || || |||||||| || || ||| |||||||||| ||||||||||| || | |||||||| |
|
|
| T |
8831 |
gaaattattcactacatgcgaagatccaagaagaagaaaggatacgtggcttttaagatcgatttagagaaagcttttgataatgttaactgggattttc |
8930 |
T |
|
| Q |
1052 |
tcagttcttgtcttcaaaattttggattcccagatgccactatcaagctcataatgcattg |
1112 |
Q |
| |
|
|| | ||||| ||| ||||||| ||||| ||| |||| ||||||||||| |||||||| |
|
|
| T |
8931 |
tccgatcttgcctttgtgattttggcttcccggataccaccatcaagctcatcatgcattg |
8991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1192 - 1319
Target Start/End: Original strand, 9212 - 9339
Alignment:
| Q |
1192 |
gatgacgttctcttgttcactaaagctcgcagatctcagcttagattcatcagagatttgtttgatcggttcagcaaggtttcagggttaaaaattaatc |
1291 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||| |||||||| | ||||||||||| ||||||||||| |||||||| | || || || |||||||||| |
|
|
| T |
9212 |
gatgatgttctcttattcaccaaagcaaacagcactcagcttcgcttcatcagagacttgtttgatcgcttcagcaaattctccggtttgaaaattaatc |
9311 |
T |
|
| Q |
1292 |
ttcataagtgtagagctttttattcaac |
1319 |
Q |
| |
|
|||| |||| |||||||||||||||||| |
|
|
| T |
9312 |
ttcacaagtctagagctttttattcaac |
9339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 6082 - 6156
Alignment:
| Q |
16 |
aaggttgatacaaacaccctgaaaatagaaaggggaaagtttgccaaagtctgtgttgaggttgatctcacaatg |
90 |
Q |
| |
|
|||||||| |||||||| |||||| | |||||||| |||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
6082 |
aaggttgacacaaacacgctgaaagttgaaaggggtaagtttgctcgagtttgtgtcgaggttgatctcacaatg |
6156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 3e-36; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 811 - 1181
Target Start/End: Original strand, 26586950 - 26587320
Alignment:
| Q |
811 |
agcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttc |
910 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||||||||||||||| |||||||| |||| || |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
26586950 |
agcctctgcaacataacctataaaatcatcaccaaagtccttgtccatcgcctcagaccgatccttaacaatattattggtccctaccaaatcagttttc |
26587049 |
T |
|
| Q |
911 |
cgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaat |
1010 |
Q |
| |
|
||| | |||| ||||| ||||||| | |||||||||||||||| ||||||| ||| | | ||| |||| ||| | || ||||| |||||||| | |
|
|
| T |
26587050 |
tgccaggtaggggcacttatgacaactcttttgttttgcaggaaattgctcactttatgaggaaatctaagaggaagaaaggctatgttgctttcaagct |
26587149 |
T |
|
| Q |
1011 |
tgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagatgccactatcaagctcataatgcat |
1110 |
Q |
| |
|
|||||| |||||||| ||||| ||||| || | ||| ||||| | | |||||||||| |||| ||||| || || ||| | ||||| ||||| |||||| |
|
|
| T |
26587150 |
tgatcttgagaaagcatttgacaatgttaactgggagtttcttaatacttgtcttcatgatttcggatttcctgacgccgccatcaaactcatcatgcat |
26587249 |
T |
|
| Q |
1111 |
tgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcctccctttcatcctactcatgg |
1181 |
Q |
| |
|
|| | |||| || || ||| | ||||| || ||||| ||||| ||||| ||||| | ||||||||||| |
|
|
| T |
26587250 |
tgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatgg |
26587320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 805 - 1082
Target Start/End: Original strand, 14759642 - 14759919
Alignment:
| Q |
805 |
cccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagca |
904 |
Q |
| |
|
||||||||||| || || || || |||||||||||||| || || || ||||| || || | || ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
14759642 |
cccattagcctttgtaatattatttacaaaatcatcactaaggtgctggttcaccggctaaggcccattcttactaatattattggcccctaccaaagca |
14759741 |
T |
|
| Q |
905 |
gttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggcttt |
1004 |
Q |
| |
|
|||||| ||||| ||| ||||| |||| ||| | ||||||||||||||||| | ||| |||||| | ||||| || ||||| | || | ||| ||||| |
|
|
| T |
14759742 |
gttttctgcctgggaggggcacttctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaagaagaaggggtttgtagcttt |
14759841 |
T |
|
| Q |
1005 |
caaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattccc |
1082 |
Q |
| |
|
||||||||| || || ||||| ||||| || || || | ||| || || ||||||||||||| ||||||| ||||| |
|
|
| T |
14759842 |
caaaattgacctggaaaaagcttttgacaaagtaaactgggaattcctgcgttcttgtcttcatgattttgggttccc |
14759919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 805 - 1082
Target Start/End: Original strand, 26973173 - 26973450
Alignment:
| Q |
805 |
cccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagca |
904 |
Q |
| |
|
||||||||||| || || || || |||||||||||||| || || | ||||| || || | || ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
26973173 |
cccattagcctttgtaatattatttacaaaatcatcactaaggtgttggttcaccggctaaggcccattcttactaatattattggcccctaccaaagca |
26973272 |
T |
|
| Q |
905 |
gttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggcttt |
1004 |
Q |
| |
|
|||||| ||||| ||| |||| |||| ||| | ||||||||||||||||| | ||| |||||| | ||||| || ||||| | || | ||| ||||| |
|
|
| T |
26973273 |
gttttctgcctgggaggggcacctctgataactccattgttttgcaggaaataattcatttcatgaggagatccaaaaagaagaaggggtttgtagcttt |
26973372 |
T |
|
| Q |
1005 |
caaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattccc |
1082 |
Q |
| |
|
|||| |||| || || ||||| ||||| || || || | ||| || || ||||||||||||| ||||||| ||||| |
|
|
| T |
26973373 |
caaacttgacctggaaaaagcttttgacaaagtaaactgggaattcctgcgttcttgtcttcatgattttgggttccc |
26973450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 774 - 969
Target Start/End: Complemental strand, 23133043 - 23132848
Alignment:
| Q |
774 |
tgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctatt |
873 |
Q |
| |
|
|||||| |||||||||||||||||||| | || |||||||| || || || | |||||||| || || | ||||| ||||| | || | |||||| |
|
|
| T |
23133043 |
tgacccacccaccacttacaaagacttcagacctattagcctttgtaatattacttacaaaattattacaacggtcctggttcacaggcttcggcctatt |
23132944 |
T |
|
| Q |
874 |
cttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatg |
969 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||| || || |||| ||||| | || ||| | ||||||||||||||||| | ||| |||||| |
|
|
| T |
23132943 |
cttactaacattattggtccctatcaaagcagctttctgcttggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
23132848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 866 - 1053
Target Start/End: Original strand, 38348248 - 38348435
Alignment:
| Q |
866 |
gacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcactt |
965 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||| || | ||||| |||| | ||| |||| || | ||| ||||||||||||| || |
|
|
| T |
38348248 |
gaccgattcttaataatattattggcccctatcaaagcagcttcctgcctggtaggggaacttctgataattctattattttgcaggaaattgtccatca |
38348347 |
T |
|
| Q |
966 |
catgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctc |
1053 |
Q |
| |
|
|||| | | |||||| |||||| | |||| ||| ||||||||||| |||||||| ||||| |||||||||||||| | ||| |||||| |
|
|
| T |
38348348 |
catgagaaaatcaaaaaagaaaaaaggttgtgttgctttcaaaatggatctagaaaaagcttttgataatgtcaactgggaatttctc |
38348435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 23135579 - 23135523
Alignment:
| Q |
15 |
caaggttgatacaaacaccctgaaaatagaaaggggaaagtttgccaaagtctgtgt |
71 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| || |||||||||| ||||||||| |
|
|
| T |
23135579 |
caaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccagagtctgtgt |
23135523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 820 - 1154
Target Start/End: Original strand, 31814377 - 31814712
Alignment:
| Q |
820 |
aacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgata |
919 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||| ||||| |||| || ||| | ||||||||||| |||||||| ||||||| ||||| || |
|
|
| T |
31814377 |
aacatcatttataaaattatcaccaaagtccttgttcaccgcctcagacccatccttgatattattattggtctctatcaaatcagttttttgcctggta |
31814476 |
T |
|
| Q |
920 |
ggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttat-gtggctttcaaaattgatctag |
1018 |
Q |
| |
|
|| |||| ||| | || | ||||||||||||||| | ||| || |||||||| || || ||||| | |||| | |||||||||||||||||| | | |
|
|
| T |
31814477 |
ggggcacaactaaaaatgccattgttttgcaggaattatttcattttatgcgcagttccaaaaagaagaaaggttttagtggctttcaaaattgatttgg |
31814576 |
T |
|
| Q |
1019 |
agaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagatgccactatcaagctcataatgcattgtatttc |
1118 |
Q |
| |
|
||||||| || || ||||| |||| |||||| ||| || |||||| ||| | ||||| |||||| | ||||||||||||||| ||||||||| |||| |
|
|
| T |
31814577 |
agaaagctttcgacaatgttaattgggatttcctccatttttgtctccaagactttggcttcccatacatcactatcaagctcatcatgcattgtgtttc |
31814676 |
T |
|
| Q |
1119 |
ttcttcaactttctctatcctctggaatggaaacaa |
1154 |
Q |
| |
|
|| || ||||| |||||||| |||||||| ||||| |
|
|
| T |
31814677 |
ctcatctactttttctatcctttggaatggtaacaa |
31814712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 787 - 1111
Target Start/End: Complemental strand, 23621069 - 23620745
Alignment:
| Q |
787 |
acttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatatta |
886 |
Q |
| |
|
||||||||||| || || ||||| ||||| |||||||| ||||||||||| || |||||||||||||| || |||| | | || ||| | ||||| |
|
|
| T |
23621069 |
acttacaaagatttccgtcccataagcctttgcaacataatctacaaaattattaccaaagtccttgtccactgccttaggctgatccttgatactatta |
23620970 |
T |
|
| Q |
887 |
ttggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaa |
986 |
Q |
| |
|
|||||||||| |||||| |||||| || | ||| ||||| ||||||| | ||||||||||||||||| || |||||||| || | || | ||| |
|
|
| T |
23620969 |
ttggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaattgtccatttcatgcggaggttcaaaaggaa |
23620870 |
T |
|
| Q |
987 |
agatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggattcccagat |
1086 |
Q |
| |
|
| | || ||||||||||||||| |||| || ||||| || |||||||||||||||| | ||||||| || || ||||| || ||||||| |||||||| |
|
|
| T |
23620869 |
aaaaggatatgtggctttcaaacttgaccttgagaatgcttttgataatgtcaattggaattttcttagatcatgtctccatgattttggcttcccagac |
23620770 |
T |
|
| Q |
1087 |
gccactatcaagctcataatgcatt |
1111 |
Q |
| |
|
||||| || |||||||| ||||||| |
|
|
| T |
23620769 |
gccacaataaagctcatcatgcatt |
23620745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 787 - 1052
Target Start/End: Original strand, 23944717 - 23944982
Alignment:
| Q |
787 |
acttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatatta |
886 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||| ||||||||||||||||| || ||||| | || || || || |||||||||||| ||||||| |
|
|
| T |
23944717 |
acttacaaagacttcaggcccatcagtttatgcaatatcatctacaaaatcattactaaagttttggtccagcgtctcagacctattcttaataatatta |
23944816 |
T |
|
| Q |
887 |
ttggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaa |
986 |
Q |
| |
|
| || || || |||||||| |||| ||||| |||| | ||| |||| || | ||||||||||||||||| | ||| | |||| | ||||| |||||||| |
|
|
| T |
23944817 |
taggcccttaccaaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaattattcattacatgagaagatctaagaagaa |
23944916 |
T |
|
| Q |
987 |
agatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttct |
1052 |
Q |
| |
|
| | | |||||| || || |||| || |||||| |||||||||| || |||| ||||||||| |
|
|
| T |
23944917 |
aacaagatttgtggcgtttaagcttgaccttgagaaatcctttgataacgttaattgggattttct |
23944982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 2e-31; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 790 - 1060
Target Start/End: Complemental strand, 11297247 - 11296977
Alignment:
| Q |
790 |
tacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattg |
889 |
Q |
| |
|
|||||||| ||| | ||||| || || |||||||| ||||||||||| ||||| ||||| | || ||||| || |||||||||||| |||||||||| |
|
|
| T |
11297247 |
tacaaagattttagacccatcagtctctgcaacataatctacaaaattatcacaaaagttttggtgcatcgtctcagacctattcttactaatattattg |
11297148 |
T |
|
| Q |
890 |
gtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaaga |
989 |
Q |
| |
|
|| |||||||||||||||||| ||||| ||| | ||| |||| ||| ||||||||||||| ||||||| ||||||||| ||||| || | ||| | |
|
|
| T |
11297147 |
gttcctatcaaagcagttttctgcctggtagtggtacttctgataactcaattgttttgcacgaaatcatccacttcatgataagatctaaaaggaagaa |
11297048 |
T |
|
| Q |
990 |
tggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttctt |
1060 |
Q |
| |
|
|||||||| |||||||| |||| | |||||||| ||||| || ||||||| ||||||||| ||||||| |
|
|
| T |
11297047 |
gggttatgtcgctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctt |
11296977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 775 - 1113
Target Start/End: Complemental strand, 24894299 - 24893961
Alignment:
| Q |
775 |
gaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattc |
874 |
Q |
| |
|
||||| |||||||||| |||||| ||| | ||||| || ||||||||||| |||||||| || ||| | ||||| ||||| ||||| || ||||||| | |
|
|
| T |
24894299 |
gacccccccaccactttcaaagattttagacccatcagtctatgcaacataatctacaagattatccctaaagttcttgtgcatcgtctcagacctatcc |
24894200 |
T |
|
| Q |
875 |
ttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcag |
974 |
Q |
| |
|
| || ||| ||||||| || | |||||||| |||| ||||| |||| | ||| |||| ||| ||||||||||||||||||| | |||||||||| | | |
|
|
| T |
24894199 |
tcagtaatcttattggcccttgccaaagcagctttctgcctggtaggggaacttctgataactcaattgttttgcaggaaattattcacttcatgaggaa |
24894100 |
T |
|
| Q |
975 |
atcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaatttt |
1074 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||| | || | |||||||| || |||||||||| | |||||| || | |||||| ||||| | ||| |
|
|
| T |
24894099 |
atcaaagaggaagaaaggttatgttgctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaattt |
24894000 |
T |
|
| Q |
1075 |
ggattcccagatgccactatcaagctcataatgcattgt |
1113 |
Q |
| |
|
|| || ||||| ||| ||||||||||| ||||||||| |
|
|
| T |
24893999 |
ggttttccagacatcaccatcaagctcatcatgcattgt |
24893961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 880 - 1161
Target Start/End: Original strand, 35233281 - 35233562
Alignment:
| Q |
880 |
aatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaa |
979 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||| |||| |||| |||||||| ||||||||||| ||||||| |||||||||| | | ||| | |
|
|
| T |
35233281 |
aatattattggcccctatcaaagcagttttctgtctggtaggggcacctctgacaactcaattgttttgaaggaaattgttcacttcatgagaaaatcca |
35233380 |
T |
|
| Q |
980 |
agaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttgtcttcaaaattttggatt |
1079 |
Q |
| |
|
| ||||| | || ||||| ||||||||| |||||||||||||||| ||||| |||||||| | ||| ||||| ||| ||| ||||| | || || || |
|
|
| T |
35233381 |
aaaagaagaaagggtatgtagctttcaaacttgatctagagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggttt |
35233480 |
T |
|
| Q |
1080 |
cccagatgccactatcaagctcataatgcattgtatttcttcttcaactttctctatcctctggaatggaaacaagttgcct |
1161 |
Q |
| |
|
||| | ||| |||||| | || ||||| ||| |||||| || ||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
35233481 |
ccctaacatcaccatcaagtttattatgcactgtgtttctttatctactttttctattttatggaatggaaacaagttgcct |
35233562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 866 - 1061
Target Start/End: Complemental strand, 32725833 - 32725638
Alignment:
| Q |
866 |
gacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcactt |
965 |
Q |
| |
|
|||||||||||| ||| ||||||| || || ||||||||||||| |||| ||||| | ||| ||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
32725833 |
gacctattcttaataatcttattggcccttaccaaagcagttttctgcctaataggggaacttatgacaactcaattgttttgtaggaaatagttcactt |
32725734 |
T |
|
| Q |
966 |
catgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttg |
1061 |
Q |
| |
|
||| | ||||| || ||||| | || ||||| ||||||||| |||| || |||||||| ||||||||||||| | ||||||||| | |||||| |
|
|
| T |
32725733 |
tatgagaagatctaaaaagaagaagggatatgtagctttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttg |
32725638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 787 - 1001
Target Start/End: Complemental strand, 12646429 - 12646215
Alignment:
| Q |
787 |
acttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatatta |
886 |
Q |
| |
|
||||||||||| || | ||||||||||| |||||||| ||||||||||||| |||||||||||||| | |||||| |||| |||||| | ||||| |
|
|
| T |
12646429 |
acttacaaagatttcagacccattagcctttgcaacattgtctacaaaatcattaccaaagtccttgtccttcgcctcagaccgattcttgttactatta |
12646330 |
T |
|
| Q |
887 |
ttggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaa |
986 |
Q |
| |
|
||| ||||| |||||||||||| ||||| ||| |||| |||||||| |||||||||||||||||| ||| |||| | ||||||||||| || |
|
|
| T |
12646329 |
ttgacccctaccaaagcagttttttgcctggtagaggcaccactgacaatgttgttgttttgcaggaaatcattcatcacatgagaagatcaaagaaaaa |
12646230 |
T |
|
| Q |
987 |
agatggttatgtggc |
1001 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
12646229 |
gaagggttatgtggc |
12646215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 882 - 956
Target Start/End: Original strand, 13599381 - 13599455
Alignment:
| Q |
882 |
tattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
||||||||| ||||||||||| | ||||| ||||||| | |||| |||||||| ||||||||||||||||||| |
|
|
| T |
13599381 |
tattattggcccctatcaaagtatttttcaacctgataagggcaccactgacaattcaattgttttgcaggaaat |
13599455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1246 - 1292
Target Start/End: Original strand, 35233785 - 35233831
Alignment:
| Q |
1246 |
gatttgtttgatcggttcagcaaggtttcagggttaaaaattaatct |
1292 |
Q |
| |
|
||||| |||||| | |||||||||| ||||||||||||||||||||| |
|
|
| T |
35233785 |
gatttatttgatagtttcagcaaggcttcagggttaaaaattaatct |
35233831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 7e-31; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 820 - 1049
Target Start/End: Complemental strand, 31325367 - 31325138
Alignment:
| Q |
820 |
aacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgata |
919 |
Q |
| |
|
||||| |||||||| ||||| || ||||| ||||| || ||||| | |||||||| | ||||||||||| ||||| | ||||||||||| ||||| || |
|
|
| T |
31325367 |
aacataatctacaagatcattacaaaagttcttgtgcaccgcctcaggcctattctcaataatattattggcccctaccgaagcagttttctgcctggta |
31325268 |
T |
|
| Q |
920 |
ggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctaga |
1019 |
Q |
| |
|
|| | ||| |||| ||| ||||||||||||||||||| ||||||||| | ||||| |||||||| | ||||| || ||||||||| |||| || || |
|
|
| T |
31325267 |
ggggaacttctgataactcaattgttttgcaggaaattgtccacttcatgagaagatccaagaagaagaagggttacgtagctttcaaacttgacctgga |
31325168 |
T |
|
| Q |
1020 |
gaaagcctttgataatgtcaatttggattt |
1049 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |
|
|
| T |
31325167 |
gaaagcttttgataatgtcaattgggattt |
31325138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 760 - 1067
Target Start/End: Original strand, 50451570 - 50451877
Alignment:
| Q |
760 |
ctcatacccaaggctgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatc |
859 |
Q |
| |
|
||||| ||||| ||||||| ||||| || | ||||||||| | || || ||||| ||||| || |||||||| || ||||| ||||||||||| |||| |
|
|
| T |
50451570 |
ctcattcccaaaactgacccccccactacctttaaagactttagacctatcagcctttgcaatataatctacaagattatcactaaagtccttgtgcatc |
50451669 |
T |
|
| Q |
860 |
gcctgtgacctattcttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcac |
959 |
Q |
| |
|
| || ||||||| || | ||| ||||||| || || |||||||| |||| |||| |||| | ||| |||| ||| | ||||||||||||||||| | |
|
|
| T |
50451670 |
gtcttagacctatactcaataatcttattggcccttaccaaagcagctttctgcctagtaggggaacttctgataactctattgttttgcaggaaattat |
50451769 |
T |
|
| Q |
960 |
tcacttcatgcgcagatcaaagaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttct |
1059 |
Q |
| |
|
||| || ||| | | || ||||||||| | |||||||| |||||||| | ||| | || ||||| |||||||||||||| | ||||||||| | |||| |
|
|
| T |
50451770 |
tcattttatgaggaagtctaagaagaaaaaaggttatgttgctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattct |
50451869 |
T |
|
| Q |
1060 |
tgtcttca |
1067 |
Q |
| |
|
|| ||||| |
|
|
| T |
50451870 |
tgccttca |
50451877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 880 - 1037
Target Start/End: Original strand, 1524762 - 1524919
Alignment:
| Q |
880 |
aatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaa |
979 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||||| |||| | ||| |||| || | ||||||||||||||||| ||||||||| | | ||||| |
|
|
| T |
1524762 |
aatattattggcccctatcaaagtagttttctgcctggtaggggaacttctgataattctattgttttgcaggaaattgtccacttcatgagaaaatcaa |
1524861 |
T |
|
| Q |
980 |
agaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgt |
1037 |
Q |
| |
|
| |||||| | |||| ||| ||||| ||| | |||||||||||||| ||||||||||| |
|
|
| T |
1524862 |
aaaagaaaaaaggttgtgtagcttttaaactagatctagagaaagcttttgataatgt |
1524919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 774 - 969
Target Start/End: Original strand, 20284538 - 20284733
Alignment:
| Q |
774 |
tgaccctcccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctatt |
873 |
Q |
| |
|
|||||| |||||||||||||||||||| | || |||| ||| || || || | |||||||| || || || ||||| ||||| | || | |||||| |
|
|
| T |
20284538 |
tgacccacccaccacttacaaagacttcagacctattaccctttgtaatattacttacaaaattattacaaaggtcctggttcacaggcttcggcctatt |
20284637 |
T |
|
| Q |
874 |
cttagcaatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatg |
969 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||| ||||| |||| ||||| | || ||| | ||||||||||||||||| | ||| |||||| |
|
|
| T |
20284638 |
cttactaacattattggtccctatcaaagcagctttctgcctggtaggggcactgcagataactctattgttttgcaggaaattattcatttcatg |
20284733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 786 - 916
Target Start/End: Complemental strand, 5193503 - 5193373
Alignment:
| Q |
786 |
cacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagcaatatt |
885 |
Q |
| |
|
|||||||||||| ||| | ||||| ||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| || |||||||||||| ||| || |
|
|
| T |
5193503 |
cacttacaaagattttagacccatcagcctctgcaacataatctacaagattatcacaaaagttcttgtgcatcgtctcagacctattcttaataatctt |
5193404 |
T |
|
| Q |
886 |
attggtccctatcaaagcagttttccgcctg |
916 |
Q |
| |
|
||||| || || ||||||||| ||| ||||| |
|
|
| T |
5193403 |
attggcccttaccaaagcagtcttctgcctg |
5193373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 781 - 1061
Target Start/End: Original strand, 43298054 - 43298334
Alignment:
| Q |
781 |
cccaccacttacaaagactttcgccccattagcctatgcaacatcatctacaaaatcatcaccaaagtccttgttcatcgcctgtgacctattcttagca |
880 |
Q |
| |
|
|||| |||||||||||| ||| | ||||| || || |||||||| ||||| || || || || ||||| ||||| || | || |||||||||| | | |
|
|
| T |
43298054 |
cccaacacttacaaagattttaggcccatcagtctctgcaacataatctataagattattacaaaagttcttgtgcactgtctcagacctattctcaata |
43298153 |
T |
|
| Q |
881 |
atattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaatcactcacttcatgcgcagatcaaa |
980 |
Q |
| |
|
|| ||||||| || || ||||||||||||| |||| |||| | ||| |||| ||| ||||||||||||||||||| ||| || ||| | ||||| || |
|
|
| T |
43298154 |
atcttattggcccttaccaaagcagttttctgcctagtaggggaacttctgataactcaattgttttgcaggaaatagttcattttatgagaagatctaa |
43298253 |
T |
|
| Q |
981 |
gaagaaagatggttatgtggctttcaaaattgatctagagaaagcctttgataatgtcaatttggattttctcagttcttg |
1061 |
Q |
| |
|
||||| | || ||||| || |||||| |||| || ||||||| ||| |||||||||| | ||||||||| | |||||| |
|
|
| T |
43298254 |
aaagaagaagggatatgtagccttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttg |
43298334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 882 - 936
Target Start/End: Original strand, 23465134 - 23465188
Alignment:
| Q |
882 |
tattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaac |
936 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
23465134 |
tattattggtccctatcagagcagttttctgcctggtaggggcactactgacaac |
23465188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 880 - 956
Target Start/End: Complemental strand, 50236920 - 50236844
Alignment:
| Q |
880 |
aatattattggtccctatcaaagcagttttccgcctgataggtgcactactgacaacacaattgttttgcaggaaat |
956 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |||| | || |||| ||| | ||||||||||||||||| |
|
|
| T |
50236920 |
aatattattggtccctatcaaagcatttttctgcctggtaggggtacatctgataactcgattgttttgcaggaaat |
50236844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 20282002 - 20282058
Alignment:
| Q |
15 |
caaggttgatacaaacaccctgaaaatagaaaggggaaagtttgccaaagtctgtgt |
71 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| || |||||||||| ||||||||| |
|
|
| T |
20282002 |
caaggtcgacacaaacaccctgaaaattgaaagaggtaagtttgccagagtctgtgt |
20282058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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