View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_high_10 (Length: 262)
Name: NF11911_high_10
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 41033652 - 41033435
Alignment:
| Q |
35 |
tattcataaacactcatacttctttatttatatctctacgtttctgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct |
134 |
Q |
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| T |
41033652 |
tattcattaagactcatacttctttatttatatctctacgtttctgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct |
41033553 |
T |
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| Q |
135 |
tgtataggagaagaaaagcaccagtcaagaccaaagaagcatttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacaatcagagctt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41033552 |
tgtataggagaagaaaagcaccagtcaagaccaaagaagcatttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacactcagagctt |
41033453 |
T |
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| Q |
235 |
cactccctttttctctct |
252 |
Q |
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| T |
41033452 |
cactccctttttctctct |
41033435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 41040244 - 41040091
Alignment:
| Q |
79 |
tgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct--tgtataggagaagaaaagcaccagtcaagaccaaagaagcat |
176 |
Q |
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||||||| ||||| |||||||| ||||| ||||||||| ||| || ||||||| ||||||||||||||||| ||| || |||||||||||||||| |
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| T |
41040244 |
tgttatagttgtccatgtgggacgtttagttatacactcatgagaaaaggttttctcttgtataggagaagaaaaacactagggaagaccaaagaagcat |
41040145 |
T |
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| Q |
177 |
ttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacaatcaga |
230 |
Q |
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| T |
41040144 |
ttttcaattttcacgaatgagccaaaagtaaagaacaactctcacgcactcaga |
41040091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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