View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_high_15 (Length: 213)
Name: NF11911_high_15
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 23628163 - 23627981
Alignment:
| Q |
12 |
gagatgaagatgggttggttatgcccaccttggtatatttggctcgtgagaaaagaccccaatttcatcataacttcaaagctggagctatgaattcatt |
111 |
Q |
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| T |
23628163 |
gagatgaagatgggtttgttatgcccacattggtatatttggctcgtgagaaaagaccccaatttcaacataacttcaaagctggagctatgaattcatt |
23628064 |
T |
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| Q |
112 |
ggtactctatataatgtattaattgttccccaagaaagtatgcagtgtattaattgttggtccacaatgcagataagggtgtc |
194 |
Q |
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| T |
23628063 |
ggtactctatataatgtattaattgttccccaagaaagtatgcagtgtattaattgttggtccacaatgcagataagggtgtc |
23627981 |
T |
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Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 23640777 - 23640591
Alignment:
| Q |
12 |
gagatgaagatgggttggttatgcccaccttggtatatttggctcgtgagaaaagaccccaatttcatcataacttcaaagctggagctatgaattcatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23640777 |
gagatgaagatgggttggttatgcccaccttggtatatttggctcgtgagaaaagaccccaatttcatcataacttcaaagctggagctatgaattcatt |
23640678 |
T |
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| Q |
112 |
ggtactctatataatg-tattaattgttcccc---aagaaagtatgcagtgtattaattgttggtccacaatgcagataagggtgtc |
194 |
Q |
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| T |
23640677 |
ggtactctatataatgttattaattgtaccccttaaagaaagtatacaatgaattaattgttggtcctcaatgcagataagggtgtc |
23640591 |
T |
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