View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_high_6 (Length: 488)
Name: NF11911_high_6
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 51548298 - 51548768
Alignment:
| Q |
1 |
ctgatttgtataacaactctaacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgtgtt |
100 |
Q |
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| T |
51548298 |
ctgatttgtataacaactataacaacatcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgtgtt |
51548397 |
T |
|
| Q |
101 |
cattgatccaatgggatggacgaaatggtcttctgatgatgataaagggttggacactttgtattatggtgagtttgcaaattatggacctggttctgcg |
200 |
Q |
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| T |
51548398 |
cattgatccaatgggatggacgaaatggtcttctgatgatgataaagggttggacactttgtattatggtgagtttgcaaattatggacctggttctgcg |
51548497 |
T |
|
| Q |
201 |
acggataaccgagtaaaatggttagggtatcatttaatggattttgatagtgcaaataatttcactgtttcagagtttattatcggtgatgcttggattg |
300 |
Q |
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| T |
51548498 |
acggataaccgagtaaaatggttagggtatcatttaatggattttgatagtgcaaataatttcactgtttcagagtttattatcggtgatgcttggattg |
51548597 |
T |
|
| Q |
301 |
gttctacttcttttccttatgatgacgggatttgatcagagaaataacgaggaatataggtttagcttatttgttctacttagtc-ttttactcagctaa |
399 |
Q |
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| T |
51548598 |
gttctacttcttttccttatgatgacgggatttgatcagagaaataacgaggaatataggtttagcttatttgttctacttagtctttttactcagctaa |
51548697 |
T |
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| Q |
400 |
tgtaaacaaaaagagtaaatgatgattttggtccctaaatgggtatagcactgtctatgtagtcatcaaat |
470 |
Q |
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| T |
51548698 |
tgtaaacaaaaagagtaaatgatgattttggtccctaaacgggtatagcactgtctatgtagtcatcaaat |
51548768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 335
Target Start/End: Original strand, 19476758 - 19477059
Alignment:
| Q |
28 |
tcaagagttaccttggaaggccttggagggtttattctaggactgttttcattgagtcttacattgatgtgttcattgatccaatgggatggacgaaatg |
127 |
Q |
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|||||||||||||||| ||||| |||||||||| |||||| || ||||| ||||||||||| ||||||| || ||||||| || ||| ||||| ||||| |
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| T |
19476758 |
tcaagagttaccttgggaggccgtggagggttttttctagaacggttttaattgagtcttatattgatgattttattgatcaaaagggttggaccaaatg |
19476857 |
T |
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| Q |
128 |
gtcttctgatgatgataaagggttggacactttgtattatggtgagtttgcaaattatggacctggttctgcgacggataaccgagtaaaatggttaggg |
227 |
Q |
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| T |
19476858 |
gtc------aaatgatcaaggtttggatacattgttttatggtgaatatgaaaattatggacctggttcaaagattgataatcgtgttgaatgggttggt |
19476951 |
T |
|
| Q |
228 |
tatcatttaatggattttgatagtgcaaataatttcactgtttcagagtttattatcggtgatgcttggattggttctacttcttttccttatgatgacg |
327 |
Q |
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|||||||| ||||||| | || |||| ||||||||| |||||| ||||||||||| |||||| ||| ||| |||||||| ||||||||||||| | |
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| T |
19476952 |
tatcatttgatggattataatgatgcatataatttcagtgtttctgagtttattattggtgatcaatggcttgagtctacttcagttccttatgatgatg |
19477051 |
T |
|
| Q |
328 |
ggatttga |
335 |
Q |
| |
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| |||||| |
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| T |
19477052 |
gaatttga |
19477059 |
T |
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