View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_high_7 (Length: 484)
Name: NF11911_high_7
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 50117804 - 50118146
Alignment:
| Q |
19 |
gaaagccaaagcctggatttaattcatctcagatggcgtacgttcagggttgagttcaaccctaaagaggtatgttatccgtcgatccagaaaacttatt |
118 |
Q |
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| T |
50117804 |
gaaagccaaagcctggatttaattcatctcagatggcgtacgttca------------accctaaagaggtatgttatccgtcgatccagaaaactgatt |
50117891 |
T |
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| Q |
119 |
ttgtttgttggtttcaataccgaaacgcgctaata--------ttatgtggggttatgagtttttgaaaatgttatctgcaaatgacttctccatgttaa |
210 |
Q |
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| T |
50117892 |
ttgtttgttggtttcaataccgaaacccgctactaatattatgttatgtggggttatgagtttttgaaaatgttatctgcaaatgacttctccatgttaa |
50117991 |
T |
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| Q |
211 |
tgttaagttaatgtatccgtaagttgtagccaattttataccgtaacattataactgttttgtaccagtctaatgtagaaattagaagatagtttaaatc |
310 |
Q |
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| T |
50117992 |
tgttaagttaatgtatccgtaagttgtagccaattttataccgtaacattataactg-tttgtaccagtctaatgtagaaattagaagatagtttaaatc |
50118090 |
T |
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| Q |
311 |
ctgatgtattatcagctgcatgccatatttcgaatgggtcctttttgtcaaataat |
366 |
Q |
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| T |
50118091 |
ctgatgtattatcagctgcatgccatatttcgaatggatcctttttgtcaaataat |
50118146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 365 - 474
Target Start/End: Original strand, 50120044 - 50120153
Alignment:
| Q |
365 |
attgtgaactataacattaatatcccttcatatttcgcgtcatttatttagatacgtctgatagatgataatatcatgattgaattatgatttggcagcc |
464 |
Q |
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| T |
50120044 |
attgtgcactataacattaatatcccttcatatttcgcgtcatttatttagatacgtctgatagatgatagtatcatgattgaattatgatttggcagcc |
50120143 |
T |
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| Q |
465 |
tacacctatg |
474 |
Q |
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| T |
50120144 |
tacacttatg |
50120153 |
T |
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