View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11911_high_8 (Length: 386)
Name: NF11911_high_8
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 11247664 - 11247763
Alignment:
| Q |
198 |
agagtttgtacataatgttttcttactcgtgtatggctgaacaacagaggtgtgaactgtctgttgccgtgtgtaacgtgcaacgatccgcatgaggaca |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11247664 |
agagtttgtacataatgttttcttaatcgtgtatggttgaacaacagaggtgtaaactgtctgttgccgtgtgtaatgtgcaacgatccgcatgaggaca |
11247763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11247547 - 11247645
Alignment:
| Q |
1 |
ctgtttgtaaagacaaaaagtaaagaatacaaatagattattagtgtggaa-cccgagaagaatgggcattattcggtgcggagtgtgtatcgtcttttt |
99 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
11247547 |
ctgtttttaaagacaaaaactaaagaatacaaatagatta---gtgtggaaacccgagaagaatgggcattattcggtgcggagtgtatatggtcttttt |
11247643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 39532968 - 39533005
Alignment:
| Q |
275 |
gtgcaacgatccgcatgaggacagctatcacatttttt |
312 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
39532968 |
gtgcaatgatccgcatgaggacagttatcacatttttt |
39533005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 378
Target Start/End: Original strand, 29206511 - 29206836
Alignment:
| Q |
55 |
gagaagaatgggcattattcggtgcggagtgtgtatcgtctttttgtcgaagatattgtggataataaccacctatgaaagaatggttattggagtggaa |
154 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||||||| |||| ||||||||||| |||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29206511 |
gagaagaatgggcattattcggtaccaagtgcgtatcgtctttgtgtcaaagatattgtgaataatacacacctgagaaggagtggttattggagtggaa |
29206610 |
T |
|
| Q |
155 |
ctttgaggttgaaggtttctcctaatgtaaagaatacggtat-gagagtttgtacataatgttttcttactcgtgtatggctgaacaacagaggtgtgaa |
253 |
Q |
| |
|
|| || |||||| || |||| || || |||||| |||| | | |||||||| | ||||||||| |||||| ||| ||||| | |||||||| | |
|
|
| T |
29206611 |
tttggaagttgaaagtgcctcccaaggtcaagaattcggtgtggcaagtttgtagagaatgttttcctactcgagtacggctgcctagaagaggtgtata |
29206710 |
T |
|
| Q |
254 |
ctgtctgttgccgtgtgtaacgtgcaacgatccgcatgaggacagctatca-cattttttccactacggtacaacagttagtatttggagagatgctggt |
352 |
Q |
| |
|
||||| || ||||||||| ||| ||||| || || || || || ||||| ||||||||| | | ||||| |||||||| |||||||| |||||| |
|
|
| T |
29206711 |
ctgtccgtctacgtgtgtaatgtgtaacgacccacacgaagatagttatcatttttttttccagtgctgtacagcagttagtgcttggagagctgctgga |
29206810 |
T |
|
| Q |
353 |
gtttggcatttaattgaacctttgct |
378 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
29206811 |
gtttggcatttaattgagcctttgct |
29206836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University