View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_low_10 (Length: 323)
Name: NF11911_low_10
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 18490497 - 18490784
Alignment:
| Q |
19 |
ccattgtcaaatgaaaccgttattgtccttgatcatttggcctttgccaatggtgttgcactctccaaagatgaagattatcttcttgtctgcgaaactt |
118 |
Q |
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| T |
18490497 |
ccattgtcaaatgaaaccgttattgtccttgatcatttggcctttgccaatggtgttgcactctccaaagatgaagattatcttcttgtctgcgaaactt |
18490596 |
T |
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| Q |
119 |
ggaagtaagtagaannnnnnngattaaagggtatattaaatatgttaattagaatttgtcttaacaaatttcattttgtatga-tttgtttttcttgtga |
217 |
Q |
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| T |
18490597 |
ggaagtaagtagaatttttttgattaaagggtatattaaatatgttgattag--tttgtcttaacaaatttcattttgtatgattttttttttcttgtga |
18490694 |
T |
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| Q |
218 |
atcagatttaggtgtctgaaacattggttaaaaggaattaacaaaggtaaaacagaaatcttcattgaaaaccttcctgctggacctgat |
307 |
Q |
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| T |
18490695 |
atcagatttaggtgtctgaaatattggttaaaaggaattaacaaaggtaaaacagaaatcttcattgaaaaccttcctgctggacctgat |
18490784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 18508998 - 18509107
Alignment:
| Q |
19 |
ccattgtcaaatgaaaccgttattgtccttgatcatttggcctttgccaatggtgttgcactctccaaagatgaagattatcttcttgtctgcgaaactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||| |
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| T |
18508998 |
ccattgtcaaatgaaaccgttattgtccttgatcatttggcctttgccaatggtgttgcactctccaaagatgaagattatcttgtggtttgtgaaactt |
18509097 |
T |
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| Q |
119 |
ggaagtaagt |
128 |
Q |
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| T |
18509098 |
ggaagtaagt |
18509107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 18509181 - 18509292
Alignment:
| Q |
194 |
ttgtatgatttgtttttcttgtgaatcagatttaggtgtctgaaacattggttaaaaggaattaacaaaggtaaaacagaaatcttcattgaaaaccttc |
293 |
Q |
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|||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
18509181 |
ttgtttgatttgtttttcatg--aatcagatttaggtgtctaaaacattggttaaaaggaattaataaaggtaaaacagaaatctttattgaaaaccttc |
18509278 |
T |
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| Q |
294 |
ctgctggacctgat |
307 |
Q |
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| T |
18509279 |
cagctggacctgat |
18509292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 18515157 - 18515259
Alignment:
| Q |
27 |
aaatgaaaccgttattgtccttgatcatttggcctttgccaatggtgttgcactctccaaagatgaagattatcttcttgtctgcgaaacttggaagtaa |
126 |
Q |
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|||||| || ||||||||| ||||| ||||| | ||||| |||||||||||||| ||||| |||||||||||| || | || |||||||||||||||||| |
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| T |
18515157 |
aaatgagacagttattgtcattgataatttgacatttgcaaatggtgttgcactgtccaaggatgaagattatgttgtggtgtgcgaaacttggaagtaa |
18515256 |
T |
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| Q |
127 |
gta |
129 |
Q |
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||| |
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| T |
18515257 |
gta |
18515259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 18515584 - 18515670
Alignment:
| Q |
220 |
cagatttaggtgtctgaaacattggttaaaaggaattaacaaaggtaaaacagaaatcttcattgaaaaccttcctgctggacctga |
306 |
Q |
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| T |
18515584 |
cagatttaggtgtgtgaggcattggctaaaaggaattaacaatggcaaaacagatatctttattgaaaacctccctggtggacctga |
18515670 |
T |
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