View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_low_14 (Length: 248)
Name: NF11911_low_14
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10982674 - 10982435
Alignment:
| Q |
1 |
aactcggttccactcacaaacccgtcttttgaatccttcagttacaaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
10982674 |
aactcggttccactcacaaacccgtcttttgaatccttcaattccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttgttctgcat |
10982575 |
T |
|
| Q |
101 |
acaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10982574 |
acaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaa |
10982475 |
T |
|
| Q |
201 |
tatcgaaccttgtggtgcccaatttcttaccaccattccc |
240 |
Q |
| |
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||| | |||||||||||||||||||||||||||||||||| |
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| T |
10982474 |
tattgcaccttgtggtgcccaatttcttaccaccattccc |
10982435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10968724 - 10968477
Alignment:
| Q |
1 |
aactcggttccactcacaaacccgtcttttgaatccttcagttacaaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
10968724 |
aactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttgttctgcat |
10968625 |
T |
|
| Q |
101 |
acaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaa |
200 |
Q |
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| T |
10968624 |
ataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaa |
10968525 |
T |
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| Q |
201 |
tatcgaaccttgtggtgcccaatttcttaccaccattcccttttgctt |
248 |
Q |
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||| | |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10968524 |
tattgcaccttgtggtgcccaatttcttgccaccattcccttttgctt |
10968477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 11002897 - 11002661
Alignment:
| Q |
8 |
ttccactcacaaacccgtcttttgaatccttcagttacaaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttgttctccatacaatgg |
107 |
Q |
| |
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|||||||||||||||| | |||||| | || |||| |||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||| || |
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| T |
11002897 |
ttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttgttctgcatacaaagg |
11002798 |
T |
|
| Q |
108 |
ccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgaa |
207 |
Q |
| |
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|||||| | |||||||||||||||||| | |||||||||||| |||||||||||||| || |||||||||||||||| || || || | ||||| | | |
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| T |
11002797 |
ccatgcaatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgca |
11002698 |
T |
|
| Q |
208 |
ccttgtggtgcccaatttcttaccaccattccctttt |
244 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
11002697 |
tcttgtggtgcccaatttctcaccaccattccctttt |
11002661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 11019199 - 11019044
Alignment:
| Q |
87 |
cctttgttctccatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatc |
186 |
Q |
| |
|
|||||||||| | |||| |||||||| | ||| ||||| |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| | |
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| T |
11019199 |
cctttgttctgcgaacaaaggccatgcaatcattggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacg |
11019100 |
T |
|
| Q |
187 |
gagtcatgctttaatatcgaaccttgtggtgcccaatttcttaccaccattccctt |
242 |
Q |
| |
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|||| ||| | ||||||| | ||||||| ||||||||||| || ||||||||||| |
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| T |
11019099 |
gagttatgactcaatatcgcaacttgtggggcccaatttctcacaaccattccctt |
11019044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 242
Target Start/End: Complemental strand, 11079922 - 11079804
Alignment:
| Q |
124 |
actccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgaaccttgtggtgcccaat |
223 |
Q |
| |
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|||||||| || | |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| ||| ||| ||||||||||||||||| | |
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| T |
11079922 |
actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtggtgcccagt |
11079823 |
T |
|
| Q |
224 |
ttcttaccaccattccctt |
242 |
Q |
| |
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|||| || ||||||||||| |
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| T |
11079822 |
ttctaacaaccattccctt |
11079804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 11050315 - 11050235
Alignment:
| Q |
87 |
cctttgttctccatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatg |
167 |
Q |
| |
|
|||||||||| || |||| |||||||| | ||| ||||| |||||| | | |||||||||||| ||||||||||||||||| |
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| T |
11050315 |
cctttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatg |
11050235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 4493253 - 4493290
Alignment:
| Q |
151 |
gagttccatccacaatgtgtcacgaatccaccaatcga |
188 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||||| |
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| T |
4493253 |
gagttccatccacaatgagtcaagaatccaccaatcga |
4493290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
140 |
cttccaacaccgagttccatccacaatgtgtca |
172 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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