View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_low_15 (Length: 236)
Name: NF11911_low_15
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38359165 - 38358929
Alignment:
| Q |
1 |
ataaaatttctcatccttttctccaagtcttctaaaagtttaactgtccaagaatagatggtaatacacttgaattacactct---------------ac |
85 |
Q |
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| T |
38359165 |
ataaaatttctcatccttttctccaagtcttttaaaagtttaactgtccaagaatagatggtaatacacttgaattacactcttgatagtaacactctac |
38359066 |
T |
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| Q |
86 |
cagcaattgatagaagggatgctttccaagctgctagcttattcttgattttatcagcaataggttgacatatttgggcttgcctttgaaaattggaact |
185 |
Q |
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| T |
38359065 |
cagcaactgatagaagggatgctttccaagctgctagcttattcttgattttatcagcaataggttgacatatttgggcttgcctttgaaaattggaact |
38358966 |
T |
|
| Q |
186 |
ctaagataagtaaatagaagaaagccaatgttaaaac |
222 |
Q |
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| T |
38358965 |
ccaagataagtaaatggaagaaagccaatgttaaaac |
38358929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 13504071 - 13504015
Alignment:
| Q |
89 |
caattgatagaagggatgctttccaagctgctagcttattcttgattttatcagcaa |
145 |
Q |
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| T |
13504071 |
caattgagagaagggaaactttccaagctactagcttatttttaactttatcagcaa |
13504015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 11983616 - 11983496
Alignment:
| Q |
73 |
aattacactctaccagcaattgatagaagggatgctttccaagctgctagcttattcttgattttatcagcaataggttg-------acatatttgggct |
165 |
Q |
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| T |
11983616 |
aattgcactctaccagccattgagagaagggatgctttccaagctgaaagctttcttttgactttatcagcaatagcttgaaaataaacatattttggtt |
11983517 |
T |
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| Q |
166 |
tgcctttgaaaattggaactc |
186 |
Q |
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| T |
11983516 |
tgcctctgaaaattggaactc |
11983496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 17964147 - 17964212
Alignment:
| Q |
78 |
cactctaccagcaattgatagaagggatgctttccaagctgctagcttattcttgattttatcagc |
143 |
Q |
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| T |
17964147 |
cactctaccagcaattgatagaagagatgccttccaagctccaagtttgctcttgattttatcagc |
17964212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 28689685 - 28689750
Alignment:
| Q |
78 |
cactctaccagcaattgatagaagggatgctttccaagctgctagcttattcttgattttatcagc |
143 |
Q |
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| T |
28689685 |
cactctaccagcaattgatagaagagatgccttccaagctccaagtttgctcttgattttatcagc |
28689750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 26450104 - 26450146
Alignment:
| Q |
76 |
tacactctaccagcaattgatagaagggatgctttccaagctg |
118 |
Q |
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| T |
26450104 |
tacactctacctgcaatagagagaagggatgctttccaagctg |
26450146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 16182354 - 16182274
Alignment:
| Q |
73 |
aattacactctaccagcaattgatagaagggatgctttccaagctgctagcttattcttgattttatcagcaataggttga |
153 |
Q |
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|||| |||| ||||||| || |||| ||| || ||||||||||| | ||||||||| || | ||||||||||| ||||||| |
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| T |
16182354 |
aattgcactttaccagccatagataaaagtgaagctttccaagcagatagcttattttttactttatcagcaaaaggttga |
16182274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 5151694 - 5151774
Alignment:
| Q |
73 |
aattacactctaccagcaattgatagaagggatgctttccaagctgctagcttattcttgattttatcagcaataggttga |
153 |
Q |
| |
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|||| |||||||||| ||| |||||||| |||||||||||||||| ||||| | || | ||||||||||| ||||||| |
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| T |
5151694 |
aattgcactctaccaataatggatagaagagatgctttccaagctgagagcttgcttttaactttatcagcaagaggttga |
5151774 |
T |
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