View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11911_low_2 (Length: 690)

Name: NF11911_low_2
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11911_low_2
NF11911_low_2
[»] chr4 (1 HSPs)
chr4 (19-675)||(54262832-54263488)


Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 19 - 675
Target Start/End: Complemental strand, 54263488 - 54262832
Alignment:
Q  19 aaacccaactccgttccttttcctccaatacttactccagagaaataattgagatgagaattgcaattattatgatacaccacactcactctagccattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263488 aaacccaactccgttccttttcctccaatacttactccagagaaataattgagatgagaattgcaattattatgatacaccacactcactctagccattt 54263389  T
Q  119 agccatatccatccacactttagnnnnnnnnnngcacattcaaaaaataaatgggatgttgactctatcaccacagccacctacacaatttagctaatct 218  Q
    |||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263388 agccatatccatccacactttagaaataaacatag-cattcaaaaaataaatgggatgttgactctatcaccacagccacctacacaatttagctaatct 54263290  T
Q  219 ccgcttaggattcctcttctagataaattatctttgattggaatacggttttgaaatacttggcacacaaacaccacaactttcaacagaatgaatttat 318  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263289 ccgcttaggattactcttctagataaattatctttgattggaatacggttttgaaatacttggcacacaaacaccacaactttcaacagaatgaatttat 54263190  T
Q  319 gctacgccttattgttgagtggttgatccaggattgctatcttccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccaccc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54263189 gctacgccttattgttgagtggttgatccaggattgctatcttccattaagacattgtaagccgacttaacagaatagaaatttgacgagtcctccaccc 54263090  T
Q  419 aaactatacaatctttttctaccctccatgatgataaccttttctaattcctcgatcatgcgatgaagcaattccgcttaccgcttgaataactctcttc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  54263089 aaactatacaatctttttctaccctccatgatgataaccttttctaattcctcaatcatgcgatgaagcaattccgcttaccgctagaataactctcttc 54262990  T
Q  519 tccacctaaaatcccacacccggttcccaccaatttccctcttcaacaccatcaccttggcctctttgttcaaagataaggaaaatagttgatcagttct 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  54262989 tccacctaaaatcccacacccggttcccaccaatttccctcttcaacaccatcaccttagcctctttgttcaaagataaggaaaatagttgatcagttct 54262890  T
Q  619 catttttaatgacctcccct-cccacccaatggtcactccaaaataaagtatcctctc 675  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  54262889 catttttaatgacctcccctccccacccaatggtcactccaaaataaagtatcctctc 54262832  T

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