View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11911_low_3 (Length: 630)
Name: NF11911_low_3
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 28430611 - 28431218
Alignment:
| Q |
18 |
ctcttgatgctgcagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430611 |
ctcttgatgctgcagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggt |
28430710 |
T |
|
| Q |
118 |
tggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28430711 |
tggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagct |
28430810 |
T |
|
| Q |
218 |
attgaacttcttggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttgaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28430811 |
attgaacttcttggagctgactcatttgtggttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttcaa |
28430910 |
T |
|
| Q |
318 |
ttctttttaggcttaattatcctattctcatagaaacggaccttcataatcgaccgaaatttgaactcaagttcaattaagatagaattaattccaatca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28430911 |
ttctttttaggcttaattatcctattctcatagaaacggaccttgataatcgaccgaaatttgaactcaagttcaattaagatagaattaactccaatca |
28431010 |
T |
|
| Q |
418 |
ctcgagttcggttgttacatgattactagatccctctaaaaactaacgaaat---nnnnnnnnttacatgaaggtgacaatacattta--tttattagct |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
28431011 |
ctcgagttcggttgttacatgattactagatccctctaaagactaacgaaataaataaaaaatttacatgaaggtgaccatacatttatttttattagct |
28431110 |
T |
|
| Q |
513 |
tgaaaccaaacacatttataatgtctccttctttctatttaggctgcaacgggcaccttggatggtatcgttgacacagtttccgccgtccatcctttgt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
28431111 |
tgaaaccaaacacatttataatgtctccttctttttatttaggctgcaacgggcaccttggatggtatcattgacacagtttctgccgtccatcctttgt |
28431210 |
T |
|
| Q |
613 |
tacctttg |
620 |
Q |
| |
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|||||||| |
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|
| T |
28431211 |
tacctttg |
28431218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 13373259 - 13373003
Alignment:
| Q |
20 |
cttgatgctgcagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttg |
119 |
Q |
| |
|
|||||||| || |||||||| || || || |||||||| || ||||||||||||||||||||||||||| | || ||| || || | |||||||||| |
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|
| T |
13373259 |
cttgatgccgctgctcctcttctttgtgcggggatcacagtatatagccctttgaaatattttggacttaacaagcctggtttacatgtgggtgtggttg |
13373160 |
T |
|
| Q |
120 |
gtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctat |
219 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
13373159 |
gtcttggtggattaggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccat |
13373060 |
T |
|
| Q |
220 |
tgaacttcttggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggt |
276 |
Q |
| |
|
||||| | ||||||||||||||||| |||||| |||||||| ||||||||||| |
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|
| T |
13373059 |
tgaacacttaggagctgactcatttgtggttagccacgaacaagaccaaatgcaggt |
13373003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 13379055 - 13378823
Alignment:
| Q |
20 |
cttgatgctgcagctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttg |
119 |
Q |
| |
|
||||||||||| ||||||||||| || || |||||||| ||||||||||| ||||| |||||||| |||| |||||| |||| |||||||||||| |
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|
| T |
13379055 |
cttgatgctgccgctcctctcctttgtgctgggatcacagtgtatagcccaatgaaacattttggatttgacaaacctggactgcatataggtgtggttg |
13378956 |
T |
|
| Q |
120 |
gtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctat |
219 |
Q |
| |
|
||||||||||| | ||||||||||||||||| || |||||||| ||||||| ||||||||| ||| | || |||||||||||||||||||||||||| || |
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| T |
13378955 |
gtcttggtggattaggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccat |
13378856 |
T |
|
| Q |
220 |
tgaacttcttggagctgactcatttgttgttag |
252 |
Q |
| |
|
||||| | |||||||||||||| || ||||| |
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| T |
13378855 |
tgaacgcttaggagctgactcattcgtggttag |
13378823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 116 - 278
Target Start/End: Complemental strand, 13426312 - 13426150
Alignment:
| Q |
116 |
gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || || |||| |||| | ||||||| |
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| T |
13426312 |
gttggtcttggtggacttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaag |
13426213 |
T |
|
| Q |
216 |
ctattgaacttcttggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggtat |
278 |
Q |
| |
|
| || |||| | | ||||||||||| ||| | || ||| | || | |||||| |||||||||| |
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|
| T |
13426212 |
cgatagaacatttaggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat |
13426150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 13413084 - 13412976
Alignment:
| Q |
108 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
207 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||| || || ||||||||| | |
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| T |
13413084 |
taggtgttgttggtcttggtggacttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaaga |
13412985 |
T |
|
| Q |
208 |
gaaggaagc |
216 |
Q |
| |
|
|||||||| |
|
|
| T |
13412984 |
aaaggaagc |
13412976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 13389318 - 13389426
Alignment:
| Q |
108 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
207 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||| || || || |||||| | |
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| T |
13389318 |
taggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaaga |
13389417 |
T |
|
| Q |
208 |
gaaggaagc |
216 |
Q |
| |
|
||| ||||| |
|
|
| T |
13389418 |
gaaagaagc |
13389426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 13385499 - 13385605
Alignment:
| Q |
110 |
ggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaaga |
209 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| || ||| ||| |||| | | |
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|
| T |
13385499 |
ggtgttgttggtcttggtgggcttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaa |
13385598 |
T |
|
| Q |
210 |
aggaagc |
216 |
Q |
| |
|
||||||| |
|
|
| T |
13385599 |
aggaagc |
13385605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 13446972 - 13446914
Alignment:
| Q |
116 |
gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13446972 |
gttggtcttggtggacttggtcatatggctgtgaaatttgctaaagcttttggtgctaa |
13446914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 13419429 - 13419297
Alignment:
| Q |
108 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaa |
207 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| || || || ||||| || || ||| ||||| | |
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|
| T |
13419429 |
taggtgttgttggtcttggtggacttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaaga |
13419330 |
T |
|
| Q |
208 |
gaaggaagctattgaacttcttggagctgactc |
240 |
Q |
| |
|
|||||||| || |||| | ||||||||||| |
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|
| T |
13419329 |
aaaggaagcaatagaacacttgggagctgactc |
13419297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 13453933 - 13453867
Alignment:
| Q |
108 |
taggtgtggttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaa |
174 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
13453933 |
taggtgttgttggtcttggtggacttggccatatggccgtgaaattcgccaaagctttcggtgctaa |
13453867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 116 - 277
Target Start/End: Original strand, 13393733 - 13393894
Alignment:
| Q |
116 |
gttggtcttggtggacttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaag |
215 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||||| ||||||||||| ||||| |||||||| ||||| || || || |||||| |||| |||| |
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| T |
13393733 |
gttggtcttggtggacttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaag |
13393832 |
T |
|
| Q |
216 |
ctattgaacttcttggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggta |
277 |
Q |
| |
|
| || ||| || |||||||| |||||| || | || ||| |||||| ||||||||||| |
|
|
| T |
13393833 |
caatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggta |
13393894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 47601327 - 47601154
Alignment:
| Q |
32 |
gctcctctcctctgcgccgggatcacggtgtatagccctttgaaatattttggacttgataaacctaacttgcaattaggtgtggttggtcttggtggac |
131 |
Q |
| |
|
|||||||| || || ||||| ||||| |||||||| ||| | |||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
47601327 |
gctcctcttctttgtgccggtatcacagtgtatagtcctcttcgatattttggactcgataaacctggtatgcatataggtgttgttggtcttggtggac |
47601228 |
T |
|
| Q |
132 |
ttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaa |
205 |
Q |
| |
|
||||||| |||||||| || ||||| ||||||||||| ||||| || || || ||||| || || ||||||||| |
|
|
| T |
47601227 |
ttggtcacatggctgttaagtttgctaaagcttttggggctaatgtgactgtaattagtacatcacctaacaaa |
47601154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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