View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_low_4 (Length: 587)
Name: NF11911_low_4
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 4 - 569
Target Start/End: Original strand, 31046900 - 31047465
Alignment:
| Q |
4 |
ggagcagcaccaaacacgttaatccattcaaggtccctcgtggtaccacgccacacaacatatatttcacgacgacccaactctctactccgttcatcgg |
103 |
Q |
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| T |
31046900 |
ggagcagcaccaaacacgttaatccattcaaggtccctcgtggtaccacgccacacaacatatatttcacgacgacccaactctctactccgttcatcgg |
31046999 |
T |
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| Q |
104 |
aactaacagcgatgtaaccaatccagttagactcacggtcccaactctcacgtgaaagtgagtgaagaataaaagcttcaggaacagaaacacgtgctgt |
203 |
Q |
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| T |
31047000 |
aactaacagcgatgtaaccaatccagttagactcacggtcccaactctcacgtgaaagtgagtgaagaataaaagcttcaggaacagaaacacgtgctgt |
31047099 |
T |
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| Q |
204 |
agcgtaaaggaaagaaacaacagtgtagtgtgtagggttttcaagcatgactttgttaaagaatgaggttttgccaaaacggcttgaaccgcagtagata |
303 |
Q |
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| T |
31047100 |
agcataaaggaaagaaacaacagtgtagtgtgtagggttttcaagcatgactttgttaaagaatgaggttttgccataacggcttgaaccgcagtagata |
31047199 |
T |
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| Q |
304 |
gagttttggtcgttgttgaaagagtcgtaggttgtttgtatgaagtcaccacaacggaggatgaggttgcggagattgaggtctagtgggtttaataagg |
403 |
Q |
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| T |
31047200 |
gagttttggtcgttgttgaaagagtcgtaggttgtttgtatgaagtcaccacaacggaggatgaggttgcggagattgaggtctagtgggtttaataagg |
31047299 |
T |
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| Q |
404 |
tttcccagttgttgttgcctaagagttggttccatgtctcttggtttattgctgttggttgtgttgatgatgatgtttgtgtgtctgttgccatgtctaa |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31047300 |
tttcccagttgttgttgcctaagagttggttccatgtctcttggtttattgttgttggttgtgttgatgatgatgtttgtgtgtctgttgccatgtctaa |
31047399 |
T |
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| Q |
504 |
gggagnnnnnnngtgtgatattcccatgttaaaggtactgagtgtgtttttgaggagtggatatat |
569 |
Q |
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| T |
31047400 |
gggagtttttttgtgtgatattcccatgttaaaggtactgagtgtgtttttgaggagtggatatat |
31047465 |
T |
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