View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11911_low_5 (Length: 569)
Name: NF11911_low_5
Description: NF11911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11911_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 38359271 - 38359829
Alignment:
| Q |
1 |
caatgaagcaggtaaccttaaagtttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcaggatcctaaggaacnnnnnnncc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
38359271 |
caatgaagcaggtaaccttaaagtttgctgggatatcatgcaatcagatttacaatgggatcagttcattagaagcaggatcctaaggaacaaaaaa-cc |
38359369 |
T |
|
| Q |
101 |
agtcgattatcatgtttcttcatctgttttgattggtgctaggcataaatactctactgtgctagaaaatgtgtcttgaaatattcgaaatggggaaaat |
200 |
Q |
| |
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|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38359370 |
agtcaattatcatgtttcgtcatctgttttgagtggtgctaggcataaatactctactgtgctagaaaatgtgtcttgaaatattggaaatggggaaaat |
38359469 |
T |
|
| Q |
201 |
attaacttctggattgattcctggtgtagagagcctttgacaattgcacttaacattcccccatcttcatagtcatttacaagctactcttggtacttgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38359470 |
attaacttctggattgattcctggtgtagagagcctttgacaactgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgc |
38359569 |
T |
|
| Q |
301 |
attcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtccattcctaattcttacaagg |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359570 |
attcataattttaagtggagtgtctcctaagaaatcttagtcgtttgcctagttttggaacagaagttgaaacttttgtccattcctaattcttacaagg |
38359669 |
T |
|
| Q |
401 |
aagataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcatatcgttttcatacttcccctcatcctcaaaacattagttgcgc |
500 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38359670 |
aagataagctgatttggaagccatctcatgatggaagtctctcctttaaagatgcatatcgttttcatacttcccctcatcctcaaaacattagttgggc |
38359769 |
T |
|
| Q |
501 |
tgaaactatttggcatgctactattgcccccctccaagcctcttcttgtttggaggattc |
560 |
Q |
| |
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| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38359770 |
taaaactatttgtaatgctgctattgtccccctccaagcctcttcttgtttggaggattc |
38359829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 457
Target Start/End: Complemental strand, 18525987 - 18525907
Alignment:
| Q |
377 |
tgtccattcctaattcttacaaggaagataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcat |
457 |
Q |
| |
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|||| |||||||| |||||||||| |||||||| ||||||||| |||||||||||| | || || ||||||||||||| |
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|
| T |
18525987 |
tgtcaattcctaacacttacaaggaggataagcttatttggaagcaatctcatgatggtaacctatcatttaaagatgcat |
18525907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 11983849 - 11983901
Alignment:
| Q |
26 |
tgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcag |
78 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| |||||| || |||||||| |
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|
| T |
11983849 |
tgttgggatattatgcagtcagatttacaatgggctcaatttatgagaagcag |
11983901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 16182586 - 16182640
Alignment:
| Q |
25 |
ttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcagg |
79 |
Q |
| |
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||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||| |
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|
| T |
16182586 |
ttgttgggacatcatgcagtcagacttacaatgggctcaattagttagaagcagg |
16182640 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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