View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11912_high_1 (Length: 682)

Name: NF11912_high_1
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11912_high_1
NF11912_high_1
[»] chr5 (1 HSPs)
chr5 (17-674)||(19395776-19396433)


Alignment Details
Target: chr5 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 17 - 674
Target Start/End: Original strand, 19395776 - 19396433
Alignment:
Q  17 tcagatttctccactgccactaagcttagaaaatgctgacatttcataaatctaatgcttcatttccaaccaactttagtttctttaaatcaatcatata 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19395776 tcagatttctccactaccactaagcttagaaaatgctgacatttcataaatctaatgcttcatttccaaccaactttagtttctttaaatcaatcatata 19395875  T
Q  117 acctttatatttacatgacctgtttgtcatccatttcattagcatcttcaattattggaaatctatttctcctcctatctctagttgacatcttctgtcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19395876 acctttatatttacatgacctgtttgtcatccatttcattagcatcttcaattattggaaatctatttctcctcctatctctagttgacatcttctgtcc 19395975  T
Q  217 atacctctcaagtatgtctgccaaatcaaccaaccctacttccctcaacttttttgctacctcctcaaacataacagcaccttcctcatttgaaaagtag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19395976 atacctctcaagtatgtctgccaaatcaaccaaccctacttccctcaactttttcgctacctcctcaaacataacagcaccttcctcatttgaaaagtag 19396075  T
Q  317 tgcaaaaatttgttataatcaaaccttggcacctccatccctcggttcatcaccctctccacatacttaatagcttcctttgaatgtccaactttcacca 416  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19396076 tgcaaaaatttgttataatcaaacctcggcacctccatccctcggttcatcaccctctccacatacttaatagcttcctttgaatgtccaactttcacca 19396175  T
Q  417 taccacccacaaaaatagaatcaaaattcacaagaggatcagtcccttttcttcctctcctccccaaatgaccctgcaacagcattatatacgtgtgcat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19396176 taccacccacaaaaatagaatcaaaattcacaagaggatcagtcccttttcttcctcttctccccaaatgaccctgcaacagcattatatacgtgtgcat 19396275  T
Q  517 agttggttcgcaacctctctttatcatttccctaaacacttgagtcgcttcacttgctcttctcaatttcaaaagcccttttatcaatccatgataaaca 616  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19396276 agttggttcacaacctctctttatcatttccctaaacacttgagtcgcttcacttgctcttctcaatttcaaaagcccttttatcaatccatgataaaca 19396375  T
Q  617 cttatatccacaacatcaatcttctccacaatttgataagcctctctaaccctatgct 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19396376 cttatatccacaacatcaatcttctccacaatttgataagcctctctaaccctatgct 19396433  T

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