View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11912_high_10 (Length: 272)
Name: NF11912_high_10
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11912_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 39129070 - 39128803
Alignment:
| Q |
5 |
atggacatcatcaccaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcccgt |
104 |
Q |
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| T |
39129070 |
atggccatcatcaccaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagccttcacaccaaagaaaagcctgt |
39128971 |
T |
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| Q |
105 |
gnnnnnnnnnnnnnnnncaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacaataaacaccaagaaaatagacat |
204 |
Q |
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| T |
39128970 |
gaaaaaaaaccaaaaaacaataaataagcttccttcaagaaacttctacaatacacttccaaaagcaaacacaaacgataaacaccaagaaaatagacat |
39128871 |
T |
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| Q |
205 |
ttaaaaatctaatcaggaaaaacaaaggttagtgaaaacagaagccaccgctctaacaacatatatac |
272 |
Q |
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| T |
39128870 |
ttaaaaatctaatcaggaaaaacaaaggtaagtgaaaacagaatccaccgctctaacaacatatatac |
39128803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 39496028 - 39496094
Alignment:
| Q |
17 |
accaccaccaacagcacagtactttgacttatcagaacccttaaaaatcatttttcaacagtagcct |
83 |
Q |
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| T |
39496028 |
accaccaccaacaccacagaactttgacttatcagaacccttaaaagccatttttcaacggtagcct |
39496094 |
T |
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