View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11912_high_2 (Length: 628)
Name: NF11912_high_2
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11912_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Original strand, 33494735 - 33495325
Alignment:
| Q |
18 |
caaaagacctaggagtttttgtaggctaaaaatgagatctcaaccagtcatcaacacccaaattagcatggtcaaagtctattccaaatctttagctcaa |
117 |
Q |
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| T |
33494735 |
caaaagacctgggagtttttgtaggctaaaaatgagatctcaacaagtcatcaacacccaaattagcatggtcaaagtctataccaaatctttagctcaa |
33494834 |
T |
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| Q |
118 |
aagtcacaagaaaataaaactagttttagcaattcaactaagtttatgcttgaataaaaaatcatttaaatttttataagagcaccatatagcgtcaaaa |
217 |
Q |
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| T |
33494835 |
aagtcacaagaaaataaaactagttttagcaattcaactaagtttatgcttggataaaaaatcatttaaatttttatatgagcaccatatagcgtcaaaa |
33494934 |
T |
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| Q |
218 |
gttgctttcccatcataagctcaaaatacagataaaacaaaatcgctaatgtgaatgtcataacttatgatcatccatgtacaaagaatagcagtccata |
317 |
Q |
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| T |
33494935 |
gttgctttcccatcataagctcaaaatacagataaaacaaaatcactaatgtgaatgtcataacttatgatcatccatgtacaaagaatagtagtccata |
33495034 |
T |
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| Q |
318 |
atattagggatactaaattttgtgtgcaactatttttcattcatttccaatcaaataattgannnnnnnnnaacaatctaagataaaattttgaaacttg |
417 |
Q |
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| T |
33495035 |
-------------------ttgtgtgcaactatttttcattcatttccaatcaaataattga--tttttttaacaatcaaagataaaattttgaaacttg |
33495113 |
T |
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| Q |
418 |
tattattaattttgatacaaaaaagcggatagacattcatgttagtaacg-aattatatatagtaatcacgtaaaattctgataaaagggtcataaagca |
516 |
Q |
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| T |
33495114 |
tattattaattttgatacaaaaaagcggatagacattcatgttagtaacgaaattatatatagtaatcacgtaaaattctgataaaagggtcataaagca |
33495213 |
T |
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| Q |
517 |
aaacaaaattttaattacctctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatcatggccatgttcatgaccctctc |
616 |
Q |
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| T |
33495214 |
aaacaaaattttaattacctctcaacatgatgaagcagtgaaattaagatctaatcactgtcactgctgctgctatcatgaccatgttcatgaccctctc |
33495313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 591
Target Start/End: Complemental strand, 9757748 - 9757719
Alignment:
| Q |
562 |
aagatctaatcactgtcactgctgctgcta |
591 |
Q |
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| T |
9757748 |
aagatctaatcactgtcactgctgctgcta |
9757719 |
T |
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