View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11912_high_7 (Length: 331)

Name: NF11912_high_7
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11912_high_7
NF11912_high_7
[»] chr6 (10 HSPs)
chr6 (1-315)||(2357787-2358101)
chr6 (53-311)||(2340070-2340328)
chr6 (10-308)||(2261198-2261496)
chr6 (53-311)||(2363154-2363412)
chr6 (10-311)||(2351480-2351781)
chr6 (53-311)||(2307389-2307647)
chr6 (100-256)||(14711309-14711465)
chr6 (100-257)||(14753379-14753536)
chr6 (1-311)||(2368848-2369158)
chr6 (124-235)||(2297361-2297472)
[»] chr3 (1 HSPs)
chr3 (53-310)||(4305852-4306109)
[»] chr4 (1 HSPs)
chr4 (53-311)||(5804156-5804414)
[»] scaffold0408 (1 HSPs)
scaffold0408 (100-257)||(528-684)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 2357787 - 2358101
Alignment:
Q  1 tatccagctggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatcttt 100  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357787 tatccagttggtcctctctctgcacctcgtgagtttaccgaaaattgtaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatcttt 2357886  T
Q  101 ggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatca 200  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||  |||    
T  2357887 ggaaaatccaaacagaccataatgtttggtcggatccattaaagtttaaaccagaaagatttcttaacacttataaagatgttgatgttcgagggtgtca 2357986  T
Q  201 ctttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattca 300  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357987 ctttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattca 2358086  T
Q  301 tttgaaatcttgtat 315  Q
    |||||||||||||||    
T  2358087 tttgaaatcttgtat 2358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 311
Target Start/End: Original strand, 2340070 - 2340328
Alignment:
Q  53 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 152  Q
    ||||||||||| | || ||||| ||||||||| |||||  ||||||||||||||| |||||||| | || ||||||| | |||||||||||||| |||||    
T  2340070 taggtggttatcaagttataaagggaactcgattaatcacaaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaacc 2340169  T
Q  153 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 252  Q
     ||||| ||| ||| ||||||||||| |||||||||| ||||  |||| |||||  | |||||||||||||||||||||||||  ||||| ||||||||     
T  2340170 agaaaggttttttaccactcataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcg 2340269  T
Q  253 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 311  Q
    ||||||||  ||||| ||||||| |   | |||| |||||||||||| ||||| |||||    
T  2340270 tttggacttcaaatgctgcatttcaccctagctagttttttgcattcctttgatatctt 2340328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 2261496 - 2261198
Alignment:
Q  10 ggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatcc 109  Q
    ||||||||||| ||||||||||| || ||  || |||| |   ||||||| |||  | ||| |||||||||| |||| |||  |||||||||||| || |    
T  2261496 ggtcctctctcagcacctcgtgaattcacagaagattgtacgttaggtggctatcgtatcaaaaaaggaactagacttatcacaaatctttggaaaattc 2261397  T
Q  110 aaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg-catcactttgagt 208  Q
    |||| || |  | | ||||| | |||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||  | |||| || || |||||||    
T  2261396 aaaccgatccaagtatttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgc-caagggtcaacattttgagt 2261298  T
Q  209 tgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaat 308  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||  | ||||| ||||||| ||||||||||||||| || || ||||||||    
T  2261297 tgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctttgaaat 2261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 53 - 311
Target Start/End: Original strand, 2363154 - 2363412
Alignment:
Q  53 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 152  Q
    ||||||| |||||||| | ||| ||||| ||| |||| || |||||||||||||| || || || | |||||||||||| ||||||||||  || |||||    
T  2363154 taggtggatatgatgtaagaaatggaacacgattaattttgaatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaacc 2363253  T
Q  153 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 252  Q
     || || |||||||  || ||||||||| ||||| || ||||  |||| |||||| | |||||||||||| ||||||||||||||||||| ||||||||     
T  2363254 ggagaggtttcttacaacgcataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatatca 2363353  T
Q  253 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 311  Q
    || || ||  ||||| ||||||||| |||||||| |||||||||||| |||||||||||    
T  2363354 ttagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatctt 2363412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 2351480 - 2351781
Alignment:
Q  10 ggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatcc 109  Q
    ||||||||| | ||||||||||| ||  |  | |||||||  || ||||||||  |||| | ||||||||||||  ||||  |||||||||||||||| |    
T  2351480 ggtcctctcgccgcacctcgtgaattctcagagaattgcactattggtggttaccatgttagaaaaggaactcggttaatgctaaatctttggaagattc 2351579  T
Q  110 aaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagtt 209  Q
    |||| || | || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||| ||||  |||| |||||  |    
T  2351580 aaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttcttaccactcataaagttgttgatgttagaggtaatcattttgaact 2351679  T
Q  210 gttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatc 309  Q
      ||||||||||||||||||||||||  ||||| | |||||||||||||||  ||||  ||||||| | | | || | |||||||||||| ||||| |||    
T  2351680 actaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgcattcctttgatatc 2351779  T
Q  310 tt 311  Q
    ||    
T  2351780 tt 2351781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 53 - 311
Target Start/End: Original strand, 2307389 - 2307647
Alignment:
Q  53 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 152  Q
    |||| |||||| |||| ||||| ||||||||| |||||  ||||||||||| |||  | || || | |||| ||||| | |||||||||||||| |||||    
T  2307389 taggaggttatcatgttataaagggaactcgattaatcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaacc 2307488  T
Q  153 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 252  Q
     ||||||||||||| |||||||||||||||||||||| | ||   | | |||| | | || ||||||||||||||||||||||| || || ||||||||     
T  2307489 agaaagatttcttaccactcataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatca 2307588  T
Q  253 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 311  Q
     |||||||  ||||| ||||||| ||| | |||| |||||||||||| ||||| |||||    
T  2307589 cttggacttcaaatgctgcatttcattctagctagttttttgcattcctttgatatctt 2307647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 14711465 - 14711309
Alignment:
Q  100 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 199  Q
    |||||||||||||| || | || ||||||| |||||||||| ||||| |||||||| ||||||||||  ||||||||||||||||||||| ||||  |||    
T  14711465 tggaagatccaaactgatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatc 14711366  T
Q  200 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttg 256  Q
    | |||||| | ||||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14711365 attttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg 14711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 14753536 - 14753379
Alignment:
Q  100 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 199  Q
    |||||||||||||| |||| ||  |||||| |||||||||| ||||| || ||||  ||||||||||  |||||||||||||||||||||   || ||||    
T  14753536 tggaagatccaaactgaccctagcgtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatc 14753437  T
Q  200 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 257  Q
    | |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  14753436 attttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 2368848 - 2369158
Alignment:
Q  1 tatccagctggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatcttt 100  Q
    ||||||||||| ||| | || ||||||||||| ||  |  | ||||||||  ||| ||| |||||||| | ||||||||| ||  |||| || ||||||     
T  2368848 tatccagctggccctttatcggcacctcgtgaattctcagagaattgcaatttagatggatatgatgtaagaaaaggaacacggttaattttgaatctta 2368947  T
Q  101 ggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatca 200  Q
    | ||||| || || || |  ||| |||||||  ||||||| || || ||||| ||  | |||||||  || |||||||| ||||||||| |||| |||||    
T  2368948 gaaagattcacactgatccaaatatttggtcaaatccattggaattcaaaccagagcggtttcttactacccataaagacgttgatgttagaggtcatca 2369047  T
Q  201 ctttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattca 300  Q
     |||||| | |||||||||||| |||||||||||||||| || ||||| || ||||| ||  ||||| ||||||||| |||||||| ||||||||||||     
T  2369048 ttttgagctattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattcc 2369147  T
Q  301 tttgaaatctt 311  Q
    |||||||||||    
T  2369148 tttgaaatctt 2369158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 2297361 - 2297472
Alignment:
Q  124 gtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaa 223  Q
    |||||||| ||||||||||| |||||||||||||| ||||||| |||| | |||||||||||| || | || ||  | ||||||||||| ||||||||||    
T  2297361 gtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaa 2297460  T
Q  224 gtggtagaagga 235  Q
    |||| |||||||    
T  2297461 gtggaagaagga 2297472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 53 - 310
Target Start/End: Original strand, 4305852 - 4306109
Alignment:
Q  53 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 152  Q
    |||||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||| || || | ||| |||||||  || || |||||||| |||||    
T  4305852 taggtggttatgatgtcaaaaaaggaactagactaatcatgaatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaacc 4305951  T
Q  153 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 252  Q
     ||| | |||||||  |||||||||| ||||||||||   || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4305952 agaacggtttcttactactcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatatct 4306051  T
Q  253 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 310  Q
    | ||| ||  ||||| ||||||||  |||||||| |||||||||||| ||||||||||    
T  4306052 tatggccttcaaatggtgcatttatctttggctagttttttgcattcctttgaaatct 4306109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 5804414 - 5804156
Alignment:
Q  53 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 152  Q
    ||||||||||| |||| | ||||||||||||| |||||  |||||||||||||||||||||||| | || ||||||| |  |||||||||| ||||| ||    
T  5804414 taggtggttatcatgttacaaaaggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagcc 5804315  T
Q  153 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 252  Q
     ||||| |||||||  |||||||||||| |||||||| | ||  |||| |||||  |   |||||||||||||||||||||||  ||||| ||||||| |    
T  5804314 agaaaggtttcttacaactcataaagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatatgt 5804215  T
Q  253 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatctt 311  Q
    ||||||||  ||||| ||||||| | | | |||| |||||||||||| ||||| |||||    
T  5804214 tttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatctt 5804156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 528 - 684
Alignment:
Q  100 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 199  Q
    |||||||||||||| |||| ||  ||| || |||||||||| ||||| || ||||  ||||||||||  |||||||||||||||||||||   || ||||    
T  528 tggaagatccaaactgaccctagcgtt-ggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatc 626  T
Q  200 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 257  Q
    | |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  627 attttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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