View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11912_high_8 (Length: 324)
Name: NF11912_high_8
Description: NF11912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11912_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 308
Target Start/End: Original strand, 34293160 - 34293463
Alignment:
| Q |
6 |
agaagcataggtcaaattat-accaattatatacaatctacaaggtaaaaaacatggcattctttgttctctaaaacttgctactaactaataattaaaa |
104 |
Q |
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| T |
34293160 |
agaagcacaggtcaaattattaccaattatatacaatctacaaggtaaaaaacatggcattctttgttctctaaaacttgctactaactaataattaaaa |
34293259 |
T |
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| Q |
105 |
aattaatatttgctacaaccaacattttttctactggattatctaacaaaatagatttacataataaatttcttggttcaacaaagatcaccatcagcag |
204 |
Q |
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| T |
34293260 |
aattaatatttgctacaaccaacattttttctactggattatctaacaacatagatttacataataaatttcttggttcaacaaagatcaccatcagcag |
34293359 |
T |
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| Q |
205 |
tgatacataagagccatgaagtgaaaataccagctccatttgttgcttctttttcatctaggggtccaaattcaggatctcaacatgttctcaaggtacc |
304 |
Q |
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| T |
34293360 |
tgatacataagagccatgaagtgaaaataccagctccatttgttgcttctttttcatctaggggtccaaattcaggatctcaacatgttctcaaggtacc |
34293459 |
T |
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| Q |
305 |
aata |
308 |
Q |
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|||| |
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| T |
34293460 |
aata |
34293463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 12726944 - 12726766
Alignment:
| Q |
121 |
aaccaacattttttctactggattatctaacaaaatagatttacata-ataaatttcttggttcaacaaagatcaccatcagcagtgatacataagagcc |
219 |
Q |
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| T |
12726944 |
aaccaacactttttctaccggattttccaataacatagattt---tacataaatttcttg-ttcaacatagatcaccctcagcagtgatacataagagcc |
12726849 |
T |
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| Q |
220 |
atgaagtgaaaataccagctccatttgttgcttctttttcatctaggggtccaaattcaggatctcaacatgttctcaaggta |
302 |
Q |
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| T |
12726848 |
aggaagtgaaaataccagctccatttgttgcttctttttcatctaggggtccaaatccaggatctcagcgtattctcaaggta |
12726766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 302
Target Start/End: Original strand, 28521155 - 28521285
Alignment:
| Q |
171 |
aatttcttggttcaacaaagatcaccatcagcagtgatacataagagccatgaagtgaaaataccagctccatttgttgcttctttttcatctaggggtc |
270 |
Q |
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||||||||| |||||| ||| |||||||||||||||||| | ||||||||||||| ||| | | |||||||||| |||| | || |||||||| || | |
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| T |
28521155 |
aatttcttg-ttcaaccaaggtcaccatcagcagtgatatacaagagccatgaagaaaaagtgctagctccatttactgctacattctcatctagaggac |
28521253 |
T |
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| Q |
271 |
caaattcaggatctcaacatgttctcaaggta |
302 |
Q |
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| T |
28521254 |
caaatccaggatccaaacatcttctcaaggta |
28521285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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